miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 52113 0.73 0.559883
Target:  5'- aGGUGCgcgacgGGCCGgccaUGGccuUCGUGGACGCg -3'
miRNA:   3'- cUCAUGa-----CCGGC----GCCu--AGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52368 0.74 0.500126
Target:  5'- cGGGgccGCUgacGGCUGCGGGgcCGUGGACGCc -3'
miRNA:   3'- -CUCa--UGA---CCGGCGCCUa-GUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52976 0.77 0.341751
Target:  5'- aAGUGCUGGaCCGCGaGAUCA-GG-CGCg -3'
miRNA:   3'- cUCAUGACC-GGCGC-CUAGUaCCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 53255 0.7 0.72377
Target:  5'- cAGaUAC-GGcCCGUGGA-CGUGGACGCc -3'
miRNA:   3'- cUC-AUGaCC-GGCGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 53908 0.66 0.914137
Target:  5'- ---cGCUGGCgGUGGAgacgC-UGGACGg -3'
miRNA:   3'- cucaUGACCGgCGCCUa---GuACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 55104 0.66 0.914137
Target:  5'- cGAG-AC-GGCCGa-GAUCGUGGAgGUg -3'
miRNA:   3'- -CUCaUGaCCGGCgcCUAGUACCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 56039 0.68 0.818019
Target:  5'- -cGUGCagGGCgUGCGGuUCGUGGAcaCGCu -3'
miRNA:   3'- cuCAUGa-CCG-GCGCCuAGUACCU--GCG- -5'
25521 3' -55.6 NC_005337.1 + 58219 0.69 0.772489
Target:  5'- -cGUACc-GCCGCGcggcGGUCAUGGAgCGCa -3'
miRNA:   3'- cuCAUGacCGGCGC----CUAGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 58593 0.74 0.461891
Target:  5'- gGAGUACuUGGCCGUGG-UCAUGuucaccACGCa -3'
miRNA:   3'- -CUCAUG-ACCGGCGCCuAGUACc-----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 58811 0.67 0.843342
Target:  5'- cGAGgcCUcGCUGCGccaGAUCGUcGGGCGCg -3'
miRNA:   3'- -CUCauGAcCGGCGC---CUAGUA-CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 59019 0.69 0.743566
Target:  5'- -cGUGC-GGUCGUGGcgCccgcugGUGGACGCg -3'
miRNA:   3'- cuCAUGaCCGGCGCCuaG------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 59071 0.68 0.818019
Target:  5'- cGGGUgGCUGGCgcuggucuCGCGGccCGcGGACGCg -3'
miRNA:   3'- -CUCA-UGACCG--------GCGCCuaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 60198 0.66 0.901811
Target:  5'- cGGGUGC-GGCgCGgGGGgggacggCuUGGGCGCg -3'
miRNA:   3'- -CUCAUGaCCG-GCgCCUa------GuACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 63526 0.67 0.843342
Target:  5'- -cGUGCaGGCCuCGGG-CGUGcGGCGCu -3'
miRNA:   3'- cuCAUGaCCGGcGCCUaGUAC-CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 65127 0.66 0.878693
Target:  5'- uGGUcgcACUGGCCGCGaaggcggccgcCGUGGACcGCg -3'
miRNA:   3'- cUCA---UGACCGGCGCcua--------GUACCUG-CG- -5'
25521 3' -55.6 NC_005337.1 + 65875 0.77 0.319121
Target:  5'- gGGGUGCUGGCCGCGGucgcCGUgaccgaGGACGg -3'
miRNA:   3'- -CUCAUGACCGGCGCCua--GUA------CCUGCg -5'
25521 3' -55.6 NC_005337.1 + 65989 0.67 0.843342
Target:  5'- uGGUGCgaGGCCGUGcGUCccGUGGGCGa -3'
miRNA:   3'- cUCAUGa-CCGGCGCcUAG--UACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 66315 0.67 0.856923
Target:  5'- uGAGcGCcgcGGUCGCGGGcuggcgacacgugcUCGUGGAgCGCg -3'
miRNA:   3'- -CUCaUGa--CCGGCGCCU--------------AGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 66865 0.79 0.258066
Target:  5'- aAGUGCUGGCCGUGGAcuUCGgcaacGGCGCg -3'
miRNA:   3'- cUCAUGACCGGCGCCU--AGUac---CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 67672 0.67 0.866907
Target:  5'- cGAGUGCUGGuuGCcguaguacgagGGGUUgcGGAgGUa -3'
miRNA:   3'- -CUCAUGACCggCG-----------CCUAGuaCCUgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.