Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 3' | -55.6 | NC_005337.1 | + | 133560 | 0.71 | 0.67304 |
Target: 5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3' miRNA: 3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 133560 | 0.71 | 0.67304 |
Target: 5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3' miRNA: 3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 53255 | 0.7 | 0.72377 |
Target: 5'- cAGaUAC-GGcCCGUGGA-CGUGGACGCc -3' miRNA: 3'- cUC-AUGaCC-GGCGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 35757 | 0.7 | 0.72377 |
Target: 5'- ---cGCUGGgCGCgaccgGGAUCGUGG-CGCg -3' miRNA: 3'- cucaUGACCgGCG-----CCUAGUACCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 71356 | 0.7 | 0.72377 |
Target: 5'- cGAGUACaGcGCCGUcaaGGA-CAUGGACGa -3' miRNA: 3'- -CUCAUGaC-CGGCG---CCUaGUACCUGCg -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 131918 | 0.7 | 0.72377 |
Target: 5'- aGAGcacCUGG-CGCGGAUCGUGcGcCGCg -3' miRNA: 3'- -CUCau-GACCgGCGCCUAGUAC-CuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 40539 | 0.7 | 0.72377 |
Target: 5'- gGAGgcUUGcGCCgGCGGGUCGcUGGAgGCc -3' miRNA: 3'- -CUCauGAC-CGG-CGCCUAGU-ACCUgCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130643 | 0.69 | 0.743566 |
Target: 5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3' miRNA: 3'- cucaUGACCgGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 59019 | 0.69 | 0.743566 |
Target: 5'- -cGUGC-GGUCGUGGcgCccgcugGUGGACGCg -3' miRNA: 3'- cuCAUGaCCGGCGCCuaG------UACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 43935 | 0.69 | 0.752348 |
Target: 5'- ---cGCUGGCCGCugcucgugaccacGGAcCA-GGACGCa -3' miRNA: 3'- cucaUGACCGGCG-------------CCUaGUaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 68292 | 0.69 | 0.772489 |
Target: 5'- ---gGCcGGCCgGCGG--CGUGGACGCg -3' miRNA: 3'- cucaUGaCCGG-CGCCuaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 58219 | 0.69 | 0.772489 |
Target: 5'- -cGUACc-GCCGCGcggcGGUCAUGGAgCGCa -3' miRNA: 3'- cuCAUGacCGGCGC----CUAGUACCU-GCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 131161 | 0.69 | 0.781887 |
Target: 5'- cGAG-GCcGGCCGCGG-UCGcGGuCGCg -3' miRNA: 3'- -CUCaUGaCCGGCGCCuAGUaCCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 95602 | 0.69 | 0.781887 |
Target: 5'- cGGGUGCagcagcgcgccaUGGCgGCGuc-CGUGGGCGCg -3' miRNA: 3'- -CUCAUG------------ACCGgCGCcuaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 48352 | 0.69 | 0.781887 |
Target: 5'- cGGUGaaccaGGCCGCGG-UgGUGGACGa -3' miRNA: 3'- cUCAUga---CCGGCGCCuAgUACCUGCg -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 70769 | 0.68 | 0.800263 |
Target: 5'- gGAGUACgaGGCCGCGGccgacucGGAgGCc -3' miRNA: 3'- -CUCAUGa-CCGGCGCCuagua--CCUgCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 132311 | 0.68 | 0.800263 |
Target: 5'- -cGUGCacGGCgGCGGAgg--GGGCGCu -3' miRNA: 3'- cuCAUGa-CCGgCGCCUaguaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 112859 | 0.68 | 0.809223 |
Target: 5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3' miRNA: 3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 102940 | 0.68 | 0.812762 |
Target: 5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3' miRNA: 3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 105442 | 0.68 | 0.817147 |
Target: 5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3' miRNA: 3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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