miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 122770 1.12 0.001745
Target:  5'- gGAGUACUGGCCGCGGAUCAUGGACGCg -3'
miRNA:   3'- -CUCAUGACCGGCGCCUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 99431 0.81 0.191899
Target:  5'- -cGUGCUGaGCCGCGGcgugggccaccUCGUGGACGCg -3'
miRNA:   3'- cuCAUGAC-CGGCGCCu----------AGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 115030 0.81 0.193842
Target:  5'- -cGUGCUGGCCaagcucaucagacucGCGGA-CGUGGACGCc -3'
miRNA:   3'- cuCAUGACCGG---------------CGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 83354 0.8 0.234148
Target:  5'- gGAGgccgACUGGCUGCGGAcCGgccgcUGGGCGCg -3'
miRNA:   3'- -CUCa---UGACCGGCGCCUaGU-----ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 66865 0.79 0.258066
Target:  5'- aAGUGCUGGCCGUGGAcuUCGgcaacGGCGCg -3'
miRNA:   3'- cUCAUGACCGGCGCCU--AGUac---CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 65875 0.77 0.319121
Target:  5'- gGGGUGCUGGCCGCGGucgcCGUgaccgaGGACGg -3'
miRNA:   3'- -CUCAUGACCGGCGCCua--GUA------CCUGCg -5'
25521 3' -55.6 NC_005337.1 + 103887 0.77 0.326537
Target:  5'- cAGcUGCUGGCCGCGcgcGA-CAUGGACGUg -3'
miRNA:   3'- cUC-AUGACCGGCGC---CUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52976 0.77 0.341751
Target:  5'- aAGUGCUGGaCCGCGaGAUCA-GG-CGCg -3'
miRNA:   3'- cUCAUGACC-GGCGC-CUAGUaCCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 88077 0.75 0.43425
Target:  5'- cGAGcucaUGCaGGCCGUGGAcaUgGUGGACGCc -3'
miRNA:   3'- -CUC----AUGaCCGGCGCCU--AgUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 58593 0.74 0.461891
Target:  5'- gGAGUACuUGGCCGUGG-UCAUGuucaccACGCa -3'
miRNA:   3'- -CUCAUG-ACCGGCGCCuAGUACc-----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 85399 0.74 0.461891
Target:  5'- uGGU-CUGGCCGcCGGG-CggGGACGCg -3'
miRNA:   3'- cUCAuGACCGGC-GCCUaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 109007 0.74 0.49043
Target:  5'- cGAGgag-GGCuCGCGGAaCGUGGGCGUg -3'
miRNA:   3'- -CUCaugaCCG-GCGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52368 0.74 0.500126
Target:  5'- cGGGgccGCUgacGGCUGCGGGgcCGUGGACGCc -3'
miRNA:   3'- -CUCa--UGA---CCGGCGCCUa-GUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130637 0.73 0.509905
Target:  5'- ---gACgaGGCCGCGGcgC-UGGACGCa -3'
miRNA:   3'- cucaUGa-CCGGCGCCuaGuACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130734 0.73 0.5287
Target:  5'- cGAGcGCucgUGGCCGCuGGGUCcgacgugugcaccGUGGACGCc -3'
miRNA:   3'- -CUCaUG---ACCGGCG-CCUAG-------------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 74567 0.73 0.529696
Target:  5'- --aUGCUGGCCGCGcGG-CAcgcGGACGCg -3'
miRNA:   3'- cucAUGACCGGCGC-CUaGUa--CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 47331 0.73 0.529696
Target:  5'- ------aGGCgCGCGuGGUCAUGGACGCc -3'
miRNA:   3'- cucaugaCCG-GCGC-CUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 90381 0.73 0.529696
Target:  5'- uGAG-ACUGGCCGUGGuaCGUGuGCGCg -3'
miRNA:   3'- -CUCaUGACCGGCGCCuaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52113 0.73 0.559883
Target:  5'- aGGUGCgcgacgGGCCGgccaUGGccuUCGUGGACGCg -3'
miRNA:   3'- cUCAUGa-----CCGGC----GCCu--AGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 80167 0.72 0.570056
Target:  5'- uGGUACgGGCCGUgccGGcgCGcGGACGCg -3'
miRNA:   3'- cUCAUGaCCGGCG---CCuaGUaCCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.