miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 2192 0.66 0.901811
Target:  5'- cGGcGCaGGCgGCGGA-CGcGGGCGCg -3'
miRNA:   3'- cUCaUGaCCGgCGCCUaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 10828 0.67 0.866907
Target:  5'- -cGUGCUGGCgcUGCGGcgCGgaGGGCGa -3'
miRNA:   3'- cuCAUGACCG--GCGCCuaGUa-CCUGCg -5'
25521 3' -55.6 NC_005337.1 + 10967 0.67 0.851402
Target:  5'- ---cACUGGCCgGCGGAUCc---GCGCa -3'
miRNA:   3'- cucaUGACCGG-CGCCUAGuaccUGCG- -5'
25521 3' -55.6 NC_005337.1 + 13232 0.66 0.901811
Target:  5'- uGGUACcGGCCcaccGCGGAccgCA-GGAUGCc -3'
miRNA:   3'- cUCAUGaCCGG----CGCCUa--GUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 17920 0.67 0.866907
Target:  5'- aAGUugaGGaCGCGGGUCAUGGcccgGCGCu -3'
miRNA:   3'- cUCAugaCCgGCGCCUAGUACC----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 21402 0.67 0.843342
Target:  5'- ---gGC-GGCCGCGGcAUCGUcGACGUg -3'
miRNA:   3'- cucaUGaCCGGCGCC-UAGUAcCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 27445 0.66 0.895291
Target:  5'- cAGUACgUGGUgGCGGGgacgGGACGg -3'
miRNA:   3'- cUCAUG-ACCGgCGCCUaguaCCUGCg -5'
25521 3' -55.6 NC_005337.1 + 29129 0.67 0.874339
Target:  5'- aGGUGCggcgauGCCGCGGAUCGU--AUGCu -3'
miRNA:   3'- cUCAUGac----CGGCGCCUAGUAccUGCG- -5'
25521 3' -55.6 NC_005337.1 + 35757 0.7 0.72377
Target:  5'- ---cGCUGGgCGCgaccgGGAUCGUGG-CGCg -3'
miRNA:   3'- cucaUGACCgGCG-----CCUAGUACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 35770 0.66 0.888536
Target:  5'- -cGgcCUuGCCGCGGAacUCggGGACGUc -3'
miRNA:   3'- cuCauGAcCGGCGCCU--AGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 37683 0.66 0.88155
Target:  5'- aGAGUuCgagGGCgGCGGcGUCcaGGACGCc -3'
miRNA:   3'- -CUCAuGa--CCGgCGCC-UAGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 38797 0.67 0.835087
Target:  5'- cGAGUgcauggACUGGCUGCgcacGGggCGcuacgccgcgcUGGACGCg -3'
miRNA:   3'- -CUCA------UGACCGGCG----CCuaGU-----------ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 40539 0.7 0.72377
Target:  5'- gGAGgcUUGcGCCgGCGGGUCGcUGGAgGCc -3'
miRNA:   3'- -CUCauGAC-CGG-CGCCUAGU-ACCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 43935 0.69 0.752348
Target:  5'- ---cGCUGGCCGCugcucgugaccacGGAcCA-GGACGCa -3'
miRNA:   3'- cucaUGACCGGCG-------------CCUaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 45187 0.68 0.818019
Target:  5'- ---gGCUGGCCGUGc--CcgGGGCGCu -3'
miRNA:   3'- cucaUGACCGGCGCcuaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 45324 0.66 0.88155
Target:  5'- gGGGUGCccaCCaagaccagGCGGAUCAUgGGGCGCg -3'
miRNA:   3'- -CUCAUGaccGG--------CGCCUAGUA-CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 47331 0.73 0.529696
Target:  5'- ------aGGCgCGCGuGGUCAUGGACGCc -3'
miRNA:   3'- cucaugaCCG-GCGC-CUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 48170 0.66 0.88155
Target:  5'- cGAGUGCUGGgaCC-CGGAgugCGUcuccggGGACGUg -3'
miRNA:   3'- -CUCAUGACC--GGcGCCUa--GUA------CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 48305 0.66 0.914137
Target:  5'- gGAGUACcuccagcggGGCaCGgGGAUgugCGUGGACuGCu -3'
miRNA:   3'- -CUCAUGa--------CCG-GCgCCUA---GUACCUG-CG- -5'
25521 3' -55.6 NC_005337.1 + 48352 0.69 0.781887
Target:  5'- cGGUGaaccaGGCCGCGG-UgGUGGACGa -3'
miRNA:   3'- cUCAUga---CCGGCGCCuAgUACCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.