miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 133560 0.71 0.67304
Target:  5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3'
miRNA:   3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 133560 0.71 0.67304
Target:  5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3'
miRNA:   3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 132311 0.68 0.800263
Target:  5'- -cGUGCacGGCgGCGGAgg--GGGCGCu -3'
miRNA:   3'- cuCAUGa-CCGgCGCCUaguaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 131918 0.7 0.72377
Target:  5'- aGAGcacCUGG-CGCGGAUCGUGcGcCGCg -3'
miRNA:   3'- -CUCau-GACCgGCGCCUAGUAC-CuGCG- -5'
25521 3' -55.6 NC_005337.1 + 131161 0.69 0.781887
Target:  5'- cGAG-GCcGGCCGCGG-UCGcGGuCGCg -3'
miRNA:   3'- -CUCaUGaCCGGCGCCuAGUaCCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 130734 0.73 0.5287
Target:  5'- cGAGcGCucgUGGCCGCuGGGUCcgacgugugcaccGUGGACGCc -3'
miRNA:   3'- -CUCaUG---ACCGGCG-CCUAG-------------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130643 0.69 0.743566
Target:  5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3'
miRNA:   3'- cucaUGACCgGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130637 0.73 0.509905
Target:  5'- ---gACgaGGCCGCGGcgC-UGGACGCa -3'
miRNA:   3'- cucaUGa-CCGGCGCCuaGuACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130068 0.68 0.818019
Target:  5'- -cGUugUGGCCGCG--UCGcuGACGCa -3'
miRNA:   3'- cuCAugACCGGCGCcuAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 129884 0.66 0.901811
Target:  5'- cGGUGgUaGCgGUGGAUC-UGGugGCa -3'
miRNA:   3'- cUCAUgAcCGgCGCCUAGuACCugCG- -5'
25521 3' -55.6 NC_005337.1 + 128780 0.67 0.874339
Target:  5'- uGGUagcACgGGUgCGCGcGAUCAUGGGCGg -3'
miRNA:   3'- cUCA---UGaCCG-GCGC-CUAGUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 122770 1.12 0.001745
Target:  5'- gGAGUACUGGCCGCGGAUCAUGGACGCg -3'
miRNA:   3'- -CUCAUGACCGGCGCCUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 115485 0.66 0.901811
Target:  5'- cGGUGCacgcacggGGCCGUGGAcgUCA-GGuGCGCc -3'
miRNA:   3'- cUCAUGa-------CCGGCGCCU--AGUaCC-UGCG- -5'
25521 3' -55.6 NC_005337.1 + 115030 0.81 0.193842
Target:  5'- -cGUGCUGGCCaagcucaucagacucGCGGA-CGUGGACGCc -3'
miRNA:   3'- cuCAUGACCGG---------------CGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 112859 0.68 0.809223
Target:  5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3'
miRNA:   3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 109007 0.74 0.49043
Target:  5'- cGAGgag-GGCuCGCGGAaCGUGGGCGUg -3'
miRNA:   3'- -CUCaugaCCG-GCGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 105505 0.67 0.859259
Target:  5'- gGAGUuCgUGGCgcagaucauCGCGGccgcCAUGGACGCg -3'
miRNA:   3'- -CUCAuG-ACCG---------GCGCCua--GUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 105442 0.68 0.817147
Target:  5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3'
miRNA:   3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 103887 0.77 0.326537
Target:  5'- cAGcUGCUGGCCGCGcgcGA-CAUGGACGUg -3'
miRNA:   3'- cUC-AUGACCGGCGC---CUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 103197 0.68 0.818019
Target:  5'- ---cGCUGaaccCCGC-GAUCGUGGACGCc -3'
miRNA:   3'- cucaUGACc---GGCGcCUAGUACCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.