miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 130068 0.68 0.818019
Target:  5'- -cGUugUGGCCGCG--UCGcuGACGCa -3'
miRNA:   3'- cuCAugACCGGCGCcuAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 71356 0.7 0.72377
Target:  5'- cGAGUACaGcGCCGUcaaGGA-CAUGGACGa -3'
miRNA:   3'- -CUCAUGaC-CGGCG---CCUaGUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 59019 0.69 0.743566
Target:  5'- -cGUGC-GGUCGUGGcgCccgcugGUGGACGCg -3'
miRNA:   3'- cuCAUGaCCGGCGCCuaG------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 43935 0.69 0.752348
Target:  5'- ---cGCUGGCCGCugcucgugaccacGGAcCA-GGACGCa -3'
miRNA:   3'- cucaUGACCGGCG-------------CCUaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 68292 0.69 0.772489
Target:  5'- ---gGCcGGCCgGCGG--CGUGGACGCg -3'
miRNA:   3'- cucaUGaCCGG-CGCCuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 48352 0.69 0.781887
Target:  5'- cGGUGaaccaGGCCGCGG-UgGUGGACGa -3'
miRNA:   3'- cUCAUga---CCGGCGCCuAgUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 95602 0.69 0.781887
Target:  5'- cGGGUGCagcagcgcgccaUGGCgGCGuc-CGUGGGCGCg -3'
miRNA:   3'- -CUCAUG------------ACCGgCGCcuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 70769 0.68 0.800263
Target:  5'- gGAGUACgaGGCCGCGGccgacucGGAgGCc -3'
miRNA:   3'- -CUCAUGa-CCGGCGCCuagua--CCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 132311 0.68 0.800263
Target:  5'- -cGUGCacGGCgGCGGAgg--GGGCGCu -3'
miRNA:   3'- cuCAUGa-CCGgCGCCUaguaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 131918 0.7 0.72377
Target:  5'- aGAGcacCUGG-CGCGGAUCGUGcGcCGCg -3'
miRNA:   3'- -CUCau-GACCgGCGCCUAGUAC-CuGCG- -5'
25521 3' -55.6 NC_005337.1 + 133560 0.71 0.67304
Target:  5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3'
miRNA:   3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52113 0.73 0.559883
Target:  5'- aGGUGCgcgacgGGCCGgccaUGGccuUCGUGGACGCg -3'
miRNA:   3'- cUCAUGa-----CCGGC----GCCu--AGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 83354 0.8 0.234148
Target:  5'- gGAGgccgACUGGCUGCGGAcCGgccgcUGGGCGCg -3'
miRNA:   3'- -CUCa---UGACCGGCGCCUaGU-----ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 66865 0.79 0.258066
Target:  5'- aAGUGCUGGCCGUGGAcuUCGgcaacGGCGCg -3'
miRNA:   3'- cUCAUGACCGGCGCCU--AGUac---CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 65875 0.77 0.319121
Target:  5'- gGGGUGCUGGCCGCGGucgcCGUgaccgaGGACGg -3'
miRNA:   3'- -CUCAUGACCGGCGCCua--GUA------CCUGCg -5'
25521 3' -55.6 NC_005337.1 + 58593 0.74 0.461891
Target:  5'- gGAGUACuUGGCCGUGG-UCAUGuucaccACGCa -3'
miRNA:   3'- -CUCAUG-ACCGGCGCCuAGUACc-----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 130637 0.73 0.509905
Target:  5'- ---gACgaGGCCGCGGcgC-UGGACGCa -3'
miRNA:   3'- cucaUGa-CCGGCGCCuaGuACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 90381 0.73 0.529696
Target:  5'- uGAG-ACUGGCCGUGGuaCGUGuGCGCg -3'
miRNA:   3'- -CUCaUGACCGGCGCCuaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 47331 0.73 0.529696
Target:  5'- ------aGGCgCGCGuGGUCAUGGACGCc -3'
miRNA:   3'- cucaugaCCG-GCGC-CUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 74567 0.73 0.529696
Target:  5'- --aUGCUGGCCGCGcGG-CAcgcGGACGCg -3'
miRNA:   3'- cucAUGACCGGCGC-CUaGUa--CCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.