miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 122770 1.12 0.001745
Target:  5'- gGAGUACUGGCCGCGGAUCAUGGACGCg -3'
miRNA:   3'- -CUCAUGACCGGCGCCUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 112859 0.68 0.809223
Target:  5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3'
miRNA:   3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 105442 0.68 0.817147
Target:  5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3'
miRNA:   3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 55104 0.66 0.914137
Target:  5'- cGAG-AC-GGCCGa-GAUCGUGGAgGUg -3'
miRNA:   3'- -CUCaUGaCCGGCgcCUAGUACCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 88077 0.75 0.43425
Target:  5'- cGAGcucaUGCaGGCCGUGGAcaUgGUGGACGCc -3'
miRNA:   3'- -CUC----AUGaCCGGCGCCU--AgUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 85399 0.74 0.461891
Target:  5'- uGGU-CUGGCCGcCGGG-CggGGACGCg -3'
miRNA:   3'- cUCAuGACCGGC-GCCUaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 52368 0.74 0.500126
Target:  5'- cGGGgccGCUgacGGCUGCGGGgcCGUGGACGCc -3'
miRNA:   3'- -CUCa--UGA---CCGGCGCCUa-GUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130734 0.73 0.5287
Target:  5'- cGAGcGCucgUGGCCGCuGGGUCcgacgugugcaccGUGGACGCc -3'
miRNA:   3'- -CUCaUG---ACCGGCG-CCUAG-------------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 35757 0.7 0.72377
Target:  5'- ---cGCUGGgCGCgaccgGGAUCGUGG-CGCg -3'
miRNA:   3'- cucaUGACCgGCG-----CCUAGUACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 131161 0.69 0.781887
Target:  5'- cGAG-GCcGGCCGCGG-UCGcGGuCGCg -3'
miRNA:   3'- -CUCaUGaCCGGCGCCuAGUaCCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 40539 0.7 0.72377
Target:  5'- gGAGgcUUGcGCCgGCGGGUCGcUGGAgGCc -3'
miRNA:   3'- -CUCauGAC-CGG-CGCCUAGU-ACCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 133560 0.71 0.67304
Target:  5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3'
miRNA:   3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 115030 0.81 0.193842
Target:  5'- -cGUGCUGGCCaagcucaucagacucGCGGA-CGUGGACGCc -3'
miRNA:   3'- cuCAUGACCGG---------------CGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130643 0.69 0.743566
Target:  5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3'
miRNA:   3'- cucaUGACCgGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 103887 0.77 0.326537
Target:  5'- cAGcUGCUGGCCGCGcgcGA-CAUGGACGUg -3'
miRNA:   3'- cUC-AUGACCGGCGC---CUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 80167 0.72 0.570056
Target:  5'- uGGUACgGGCCGUgccGGcgCGcGGACGCg -3'
miRNA:   3'- cUCAUGaCCGGCG---CCuaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 58219 0.69 0.772489
Target:  5'- -cGUACc-GCCGCGcggcGGUCAUGGAgCGCa -3'
miRNA:   3'- cuCAUGacCGGCGC----CUAGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 102940 0.68 0.812762
Target:  5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3'
miRNA:   3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 52976 0.77 0.341751
Target:  5'- aAGUGCUGGaCCGCGaGAUCA-GG-CGCg -3'
miRNA:   3'- cUCAUGACC-GGCGC-CUAGUaCCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 109007 0.74 0.49043
Target:  5'- cGAGgag-GGCuCGCGGAaCGUGGGCGUg -3'
miRNA:   3'- -CUCaugaCCG-GCGCCUaGUACCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.