miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 29129 0.67 0.874339
Target:  5'- aGGUGCggcgauGCCGCGGAUCGU--AUGCu -3'
miRNA:   3'- cUCAUGac----CGGCGCCUAGUAccUGCG- -5'
25521 3' -55.6 NC_005337.1 + 128780 0.67 0.874339
Target:  5'- uGGUagcACgGGUgCGCGcGAUCAUGGGCGg -3'
miRNA:   3'- cUCA---UGaCCG-GCGC-CUAGUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 67672 0.67 0.866907
Target:  5'- cGAGUGCUGGuuGCcguaguacgagGGGUUgcGGAgGUa -3'
miRNA:   3'- -CUCAUGACCggCG-----------CCUAGuaCCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 17920 0.67 0.866907
Target:  5'- aAGUugaGGaCGCGGGUCAUGGcccgGCGCu -3'
miRNA:   3'- cUCAugaCCgGCGCCUAGUACC----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 10828 0.67 0.866907
Target:  5'- -cGUGCUGGCgcUGCGGcgCGgaGGGCGa -3'
miRNA:   3'- cuCAUGACCG--GCGCCuaGUa-CCUGCg -5'
25521 3' -55.6 NC_005337.1 + 77382 0.67 0.862343
Target:  5'- cGGUGCcgcaacaccagccgGcGCCGCGGGagGUGGAUGUg -3'
miRNA:   3'- cUCAUGa-------------C-CGGCGCCUagUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 105505 0.67 0.859259
Target:  5'- gGAGUuCgUGGCgcagaucauCGCGGccgcCAUGGACGCg -3'
miRNA:   3'- -CUCAuG-ACCG---------GCGCCua--GUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 71459 0.67 0.859259
Target:  5'- aAGUACcacGuGCCGCaGGUCucgcUGGACGCc -3'
miRNA:   3'- cUCAUGa--C-CGGCGcCUAGu---ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 97673 0.67 0.859259
Target:  5'- ---cGCUccaGGCCGCGGGcgugcacgUgGUGGACGUc -3'
miRNA:   3'- cucaUGA---CCGGCGCCU--------AgUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 66315 0.67 0.856923
Target:  5'- uGAGcGCcgcGGUCGCGGGcuggcgacacgugcUCGUGGAgCGCg -3'
miRNA:   3'- -CUCaUGa--CCGGCGCCU--------------AGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 10967 0.67 0.851402
Target:  5'- ---cACUGGCCgGCGGAUCc---GCGCa -3'
miRNA:   3'- cucaUGACCGG-CGCCUAGuaccUGCG- -5'
25521 3' -55.6 NC_005337.1 + 58811 0.67 0.843342
Target:  5'- cGAGgcCUcGCUGCGccaGAUCGUcGGGCGCg -3'
miRNA:   3'- -CUCauGAcCGGCGC---CUAGUA-CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 92519 0.67 0.843342
Target:  5'- aGAGccUGCgcGGCCGCcc--CAUGGACGCg -3'
miRNA:   3'- -CUC--AUGa-CCGGCGccuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 63526 0.67 0.843342
Target:  5'- -cGUGCaGGCCuCGGG-CGUGcGGCGCu -3'
miRNA:   3'- cuCAUGaCCGGcGCCUaGUAC-CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 21402 0.67 0.843342
Target:  5'- ---gGC-GGCCGCGGcAUCGUcGACGUg -3'
miRNA:   3'- cucaUGaCCGGCGCC-UAGUAcCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 65989 0.67 0.843342
Target:  5'- uGGUGCgaGGCCGUGcGUCccGUGGGCGa -3'
miRNA:   3'- cUCAUGa-CCGGCGCcUAG--UACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 38797 0.67 0.835087
Target:  5'- cGAGUgcauggACUGGCUGCgcacGGggCGcuacgccgcgcUGGACGCg -3'
miRNA:   3'- -CUCA------UGACCGGCG----CCuaGU-----------ACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 45187 0.68 0.818019
Target:  5'- ---gGCUGGCCGUGc--CcgGGGCGCu -3'
miRNA:   3'- cucaUGACCGGCGCcuaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 56039 0.68 0.818019
Target:  5'- -cGUGCagGGCgUGCGGuUCGUGGAcaCGCu -3'
miRNA:   3'- cuCAUGa-CCG-GCGCCuAGUACCU--GCG- -5'
25521 3' -55.6 NC_005337.1 + 68117 0.68 0.818019
Target:  5'- -cGUACUcggGGUCGCGGggCcgGUGGcCGCg -3'
miRNA:   3'- cuCAUGA---CCGGCGCCuaG--UACCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.