miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 56039 0.68 0.818019
Target:  5'- -cGUGCagGGCgUGCGGuUCGUGGAcaCGCu -3'
miRNA:   3'- cuCAUGa-CCG-GCGCCuAGUACCU--GCG- -5'
25521 3' -55.6 NC_005337.1 + 45187 0.68 0.818019
Target:  5'- ---gGCUGGCCGUGc--CcgGGGCGCu -3'
miRNA:   3'- cucaUGACCGGCGCcuaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130068 0.68 0.818019
Target:  5'- -cGUugUGGCCGCG--UCGcuGACGCa -3'
miRNA:   3'- cuCAugACCGGCGCcuAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 105442 0.68 0.817147
Target:  5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3'
miRNA:   3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 102940 0.68 0.812762
Target:  5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3'
miRNA:   3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 112859 0.68 0.809223
Target:  5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3'
miRNA:   3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 132311 0.68 0.800263
Target:  5'- -cGUGCacGGCgGCGGAgg--GGGCGCu -3'
miRNA:   3'- cuCAUGa-CCGgCGCCUaguaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 70769 0.68 0.800263
Target:  5'- gGAGUACgaGGCCGCGGccgacucGGAgGCc -3'
miRNA:   3'- -CUCAUGa-CCGGCGCCuagua--CCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 95602 0.69 0.781887
Target:  5'- cGGGUGCagcagcgcgccaUGGCgGCGuc-CGUGGGCGCg -3'
miRNA:   3'- -CUCAUG------------ACCGgCGCcuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 48352 0.69 0.781887
Target:  5'- cGGUGaaccaGGCCGCGG-UgGUGGACGa -3'
miRNA:   3'- cUCAUga---CCGGCGCCuAgUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 131161 0.69 0.781887
Target:  5'- cGAG-GCcGGCCGCGG-UCGcGGuCGCg -3'
miRNA:   3'- -CUCaUGaCCGGCGCCuAGUaCCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 68292 0.69 0.772489
Target:  5'- ---gGCcGGCCgGCGG--CGUGGACGCg -3'
miRNA:   3'- cucaUGaCCGG-CGCCuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 58219 0.69 0.772489
Target:  5'- -cGUACc-GCCGCGcggcGGUCAUGGAgCGCa -3'
miRNA:   3'- cuCAUGacCGGCGC----CUAGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 43935 0.69 0.752348
Target:  5'- ---cGCUGGCCGCugcucgugaccacGGAcCA-GGACGCa -3'
miRNA:   3'- cucaUGACCGGCG-------------CCUaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130643 0.69 0.743566
Target:  5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3'
miRNA:   3'- cucaUGACCgGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 59019 0.69 0.743566
Target:  5'- -cGUGC-GGUCGUGGcgCccgcugGUGGACGCg -3'
miRNA:   3'- cuCAUGaCCGGCGCCuaG------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 131918 0.7 0.72377
Target:  5'- aGAGcacCUGG-CGCGGAUCGUGcGcCGCg -3'
miRNA:   3'- -CUCau-GACCgGCGCCUAGUAC-CuGCG- -5'
25521 3' -55.6 NC_005337.1 + 53255 0.7 0.72377
Target:  5'- cAGaUAC-GGcCCGUGGA-CGUGGACGCc -3'
miRNA:   3'- cUC-AUGaCC-GGCGCCUaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 40539 0.7 0.72377
Target:  5'- gGAGgcUUGcGCCgGCGGGUCGcUGGAgGCc -3'
miRNA:   3'- -CUCauGAC-CGG-CGCCUAGU-ACCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 71356 0.7 0.72377
Target:  5'- cGAGUACaGcGCCGUcaaGGA-CAUGGACGa -3'
miRNA:   3'- -CUCAUGaC-CGGCG---CCUaGUACCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.