miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 65992 0.66 0.711402
Target:  5'- uGCGaGGCCGUgCGucCCGUGGgCGaGCGCg -3'
miRNA:   3'- -CGCgCCGGUA-GCu-GGCGUC-GCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 57063 0.66 0.711402
Target:  5'- cCGCaGCCA--GGCCGCucuGCGaGCGCc -3'
miRNA:   3'- cGCGcCGGUagCUGGCGu--CGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 92701 0.66 0.711402
Target:  5'- -gGgGGCCGucuUCGACgacuccaaGC-GCGUGCGCc -3'
miRNA:   3'- cgCgCCGGU---AGCUGg-------CGuCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 12228 0.66 0.711402
Target:  5'- -gGUGGCCA--GGCUguGCAGCG-GCGUg -3'
miRNA:   3'- cgCGCCGGUagCUGG--CGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 46674 0.66 0.711402
Target:  5'- cGCGCaGCaGUCGcCCG-AGCG-GCGCc -3'
miRNA:   3'- -CGCGcCGgUAGCuGGCgUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 124776 0.66 0.710431
Target:  5'- gGUGaCGGCCAUCGAgcuCUGCgcgcagaugggccGGCGguggacGCGCc -3'
miRNA:   3'- -CGC-GCCGGUAGCU---GGCG-------------UCGCa-----CGCG- -5'
25521 5' -60.4 NC_005337.1 + 85903 0.66 0.70946
Target:  5'- gGCGCGGCUGaCGuucucguccaccACCGCGGCcugguucaccgGCGCc -3'
miRNA:   3'- -CGCGCCGGUaGC------------UGGCGUCGca---------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 41397 0.66 0.70946
Target:  5'- cGCGCGGgCAgaugacguccggCGuCCGCgggAGCGUGC-Cg -3'
miRNA:   3'- -CGCGCCgGUa-----------GCuGGCG---UCGCACGcG- -5'
25521 5' -60.4 NC_005337.1 + 132428 0.66 0.708488
Target:  5'- aCGCGGCCAcCaACUGCGcgcucgccaaagucGCGaGCGCg -3'
miRNA:   3'- cGCGCCGGUaGcUGGCGU--------------CGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 39808 0.66 0.701668
Target:  5'- aGUGCGGCCGagCGAcCCGgAGC-UGCu- -3'
miRNA:   3'- -CGCGCCGGUa-GCU-GGCgUCGcACGcg -5'
25521 5' -60.4 NC_005337.1 + 35745 0.66 0.701668
Target:  5'- aCGCGGCCGUCGGgCGggcucccccCGGCcuUGcCGCg -3'
miRNA:   3'- cGCGCCGGUAGCUgGC---------GUCGc-AC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 29800 0.66 0.701668
Target:  5'- uGCGCGuGCuCcgCGugcuCCGCGuacuGUGUGUGCu -3'
miRNA:   3'- -CGCGC-CG-GuaGCu---GGCGU----CGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 109446 0.66 0.701668
Target:  5'- aGCuaGGUCAcaCGuaaACCGUGuGCGUGCGCg -3'
miRNA:   3'- -CGcgCCGGUa-GC---UGGCGU-CGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 71882 0.66 0.701668
Target:  5'- -gGCGGCgGUgGugaACCGCaccAGCGaccUGCGCa -3'
miRNA:   3'- cgCGCCGgUAgC---UGGCG---UCGC---ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 127370 0.66 0.701668
Target:  5'- uGCGC-GCCGgcgCGGacCCGC-GCGcGCGCg -3'
miRNA:   3'- -CGCGcCGGUa--GCU--GGCGuCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 24972 0.66 0.701668
Target:  5'- uGCGUGGUgCGcuucuUCGGCUGCAaCGcGCGCa -3'
miRNA:   3'- -CGCGCCG-GU-----AGCUGGCGUcGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 127828 0.66 0.701668
Target:  5'- cGUGCGGagcguCGUCGACCGCA-CGc-CGCu -3'
miRNA:   3'- -CGCGCCg----GUAGCUGGCGUcGCacGCG- -5'
25521 5' -60.4 NC_005337.1 + 6014 0.66 0.700691
Target:  5'- -aGCGGUCAcCGggcgggcGCCaGCAGggcCGUGCGCa -3'
miRNA:   3'- cgCGCCGGUaGC-------UGG-CGUC---GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 1576 0.66 0.700691
Target:  5'- gGCGCGGCCcagGUUGugCGCgacgauguuguccAGgG-GCGUg -3'
miRNA:   3'- -CGCGCCGG---UAGCugGCG-------------UCgCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 50404 0.66 0.691878
Target:  5'- cGCGCcGCgCGUCGGugaCGgAGCGgcggGCGCu -3'
miRNA:   3'- -CGCGcCG-GUAGCUg--GCgUCGCa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.