miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 116691 0.66 0.721073
Target:  5'- cCGCGGgCGagcCGGCCGCAaUG-GCGCg -3'
miRNA:   3'- cGCGCCgGUa--GCUGGCGUcGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 25304 0.66 0.721073
Target:  5'- gGCG-GGCCgcgcGUCGACCGgC-GCGUGUa- -3'
miRNA:   3'- -CGCgCCGG----UAGCUGGC-GuCGCACGcg -5'
25521 5' -60.4 NC_005337.1 + 63526 0.66 0.721073
Target:  5'- cGUGCaGGCC-UCGGgCGU-GCG-GCGCu -3'
miRNA:   3'- -CGCG-CCGGuAGCUgGCGuCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 115495 0.66 0.721073
Target:  5'- aCGgGGCCGUgGA-CGuCAG-GUGCGCc -3'
miRNA:   3'- cGCgCCGGUAgCUgGC-GUCgCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 71318 0.66 0.721073
Target:  5'- uCGuCGGCgG-CGACCcgcGCGGCGgcgGUGCa -3'
miRNA:   3'- cGC-GCCGgUaGCUGG---CGUCGCa--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 83039 0.66 0.721073
Target:  5'- -gGCGGacaCCGUCagcauGCUGCugGGCGUGUGCa -3'
miRNA:   3'- cgCGCC---GGUAGc----UGGCG--UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 107074 0.66 0.721073
Target:  5'- gGCGC-GCCAggGGgUGCcGCuGUGCGCg -3'
miRNA:   3'- -CGCGcCGGUagCUgGCGuCG-CACGCG- -5'
25521 5' -60.4 NC_005337.1 + 104705 0.66 0.721073
Target:  5'- -gGCaGGCCAaCGagggccgccGCCGCGGCG-GCGg -3'
miRNA:   3'- cgCG-CCGGUaGC---------UGGCGUCGCaCGCg -5'
25521 5' -60.4 NC_005337.1 + 110354 0.66 0.721073
Target:  5'- cGCGCcuGCCG-CGGgCGC-GCGgGCGCg -3'
miRNA:   3'- -CGCGc-CGGUaGCUgGCGuCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 131698 0.66 0.721073
Target:  5'- cGCGUGGCuaaCAUCGAgaaccgcaagaUCGCGggcagcuccGCGUGcCGCa -3'
miRNA:   3'- -CGCGCCG---GUAGCU-----------GGCGU---------CGCAC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 28252 0.66 0.721073
Target:  5'- cGCGCGGCa--CcACgCGCA-CGUGCGUg -3'
miRNA:   3'- -CGCGCCGguaGcUG-GCGUcGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 56300 0.66 0.721073
Target:  5'- aUGCGGCCGcugcUCGAgaucUCGCAG-GaGCGCu -3'
miRNA:   3'- cGCGCCGGU----AGCU----GGCGUCgCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 70780 0.66 0.721073
Target:  5'- cCGCGGCCGacUCGGaggccaUGCGGCGgcuggugaGCGUc -3'
miRNA:   3'- cGCGCCGGU--AGCUg-----GCGUCGCa-------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 104653 0.66 0.720109
Target:  5'- aCGCuggacaaGGCCAcCGugCGCugccGCGgGCGCa -3'
miRNA:   3'- cGCG-------CCGGUaGCugGCGu---CGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 74089 0.66 0.720109
Target:  5'- gGCGCGGUCAccuucaacgagUCGAaguacugccugguCCGCAaCG-GCGCc -3'
miRNA:   3'- -CGCGCCGGU-----------AGCU-------------GGCGUcGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 65992 0.66 0.711402
Target:  5'- uGCGaGGCCGUgCGucCCGUGGgCGaGCGCg -3'
miRNA:   3'- -CGCgCCGGUA-GCu-GGCGUC-GCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 46674 0.66 0.711402
Target:  5'- cGCGCaGCaGUCGcCCG-AGCG-GCGCc -3'
miRNA:   3'- -CGCGcCGgUAGCuGGCgUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 79054 0.66 0.711402
Target:  5'- cGCGCGGUCugguccuugCGGCgCGCcaccacgaAGC-UGCGCa -3'
miRNA:   3'- -CGCGCCGGua-------GCUG-GCG--------UCGcACGCG- -5'
25521 5' -60.4 NC_005337.1 + 12228 0.66 0.711402
Target:  5'- -gGUGGCCA--GGCUguGCAGCG-GCGUg -3'
miRNA:   3'- cgCGCCGGUagCUGG--CGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 131423 0.66 0.711402
Target:  5'- cGCGCGGCuCcgCGGacuccgucuCCGCGGaGgccGCGCu -3'
miRNA:   3'- -CGCGCCG-GuaGCU---------GGCGUCgCa--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.