miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 124776 0.66 0.710431
Target:  5'- gGUGaCGGCCAUCGAgcuCUGCgcgcagaugggccGGCGguggacGCGCc -3'
miRNA:   3'- -CGC-GCCGGUAGCU---GGCG-------------UCGCa-----CGCG- -5'
25521 5' -60.4 NC_005337.1 + 67744 0.66 0.681055
Target:  5'- gGCGCGGCgCGcagcuccagcgucUCGGCCggcuGCAGCGgcuccaGCGa -3'
miRNA:   3'- -CGCGCCG-GU-------------AGCUGG----CGUCGCa-----CGCg -5'
25521 5' -60.4 NC_005337.1 + 98438 0.66 0.682041
Target:  5'- aGCGCacgaacuuGUCGggaUCGGCCugcgGCAuGCGUGCGCa -3'
miRNA:   3'- -CGCGc-------CGGU---AGCUGG----CGU-CGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 90291 0.66 0.688931
Target:  5'- aGCGUcucGGCCuccUCGccgccgggcgcgccGCCGUAGaugGUGCGCg -3'
miRNA:   3'- -CGCG---CCGGu--AGC--------------UGGCGUCg--CACGCG- -5'
25521 5' -60.4 NC_005337.1 + 39808 0.66 0.701668
Target:  5'- aGUGCGGCCGagCGAcCCGgAGC-UGCu- -3'
miRNA:   3'- -CGCGCCGGUa-GCU-GGCgUCGcACGcg -5'
25521 5' -60.4 NC_005337.1 + 63526 0.66 0.721073
Target:  5'- cGUGCaGGCC-UCGGgCGU-GCG-GCGCu -3'
miRNA:   3'- -CGCG-CCGGuAGCUgGCGuCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 110944 0.66 0.691878
Target:  5'- aGUGUGGg---CGACCGCGucuGCGUGuCGCc -3'
miRNA:   3'- -CGCGCCgguaGCUGGCGU---CGCAC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 104653 0.66 0.720109
Target:  5'- aCGCuggacaaGGCCAcCGugCGCugccGCGgGCGCa -3'
miRNA:   3'- cGCG-------CCGGUaGCugGCGu---CGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 39941 0.66 0.691878
Target:  5'- uGCGCGGCgGgCGcCuCGC-GCGgGCGCu -3'
miRNA:   3'- -CGCGCCGgUaGCuG-GCGuCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 6268 0.66 0.685981
Target:  5'- uGCGCGGagCA-CGuCCaGCAGCGUcgugucggcguugcaGCGCa -3'
miRNA:   3'- -CGCGCCg-GUaGCuGG-CGUCGCA---------------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 67358 0.66 0.711402
Target:  5'- gGCGCaGCCcaUGACCGaguacauCGUGCGCc -3'
miRNA:   3'- -CGCGcCGGuaGCUGGCguc----GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 104705 0.66 0.721073
Target:  5'- -gGCaGGCCAaCGagggccgccGCCGCGGCG-GCGg -3'
miRNA:   3'- cgCG-CCGGUaGC---------UGGCGUCGCaCGCg -5'
25521 5' -60.4 NC_005337.1 + 70780 0.66 0.721073
Target:  5'- cCGCGGCCGacUCGGaggccaUGCGGCGgcuggugaGCGUc -3'
miRNA:   3'- cGCGCCGGU--AGCUg-----GCGUCGCa-------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 74984 0.66 0.711402
Target:  5'- -aGCGGCCggGUCGACCacguacacgagGCGGCcgccgcugacGCGCa -3'
miRNA:   3'- cgCGCCGG--UAGCUGG-----------CGUCGca--------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 16751 0.66 0.711402
Target:  5'- uGCGCGGUCA-CGGCgCGCcGGCugauGUcGUGCa -3'
miRNA:   3'- -CGCGCCGGUaGCUG-GCG-UCG----CA-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 36673 0.66 0.730671
Target:  5'- gGCGaUGGCCAgCGACUuCAGCacgGCGUc -3'
miRNA:   3'- -CGC-GCCGGUaGCUGGcGUCGca-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 132428 0.66 0.708488
Target:  5'- aCGCGGCCAcCaACUGCGcgcucgccaaagucGCGaGCGCg -3'
miRNA:   3'- cGCGCCGGUaGcUGGCGU--------------CGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 98988 0.66 0.682041
Target:  5'- aGCGgGGCCGagGuggaGCCGCcccccgAG-GUGCGCg -3'
miRNA:   3'- -CGCgCCGGUagC----UGGCG------UCgCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 28252 0.66 0.721073
Target:  5'- cGCGCGGCa--CcACgCGCA-CGUGCGUg -3'
miRNA:   3'- -CGCGCCGguaGcUG-GCGUcGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 35745 0.66 0.701668
Target:  5'- aCGCGGCCGUCGGgCGggcucccccCGGCcuUGcCGCg -3'
miRNA:   3'- cGCGCCGGUAGCUgGC---------GUCGc-AC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.