miRNA display CGI


Results 21 - 40 of 499 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 1800 0.77 0.170546
Target:  5'- uCGUGGCCAUgGAgUGCAGCG-GCGUg -3'
miRNA:   3'- cGCGCCGGUAgCUgGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 1829 0.67 0.622478
Target:  5'- aGCGC-GCUcgCGACUuuGGCGaGCGCg -3'
miRNA:   3'- -CGCGcCGGuaGCUGGcgUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 2097 0.67 0.641388
Target:  5'- gGCGCGcGCCG-CGAgCCcggucagGCAcGCGUGCaGCg -3'
miRNA:   3'- -CGCGC-CGGUaGCU-GG-------CGU-CGCACG-CG- -5'
25521 5' -60.4 NC_005337.1 + 2212 0.81 0.097971
Target:  5'- gGCGCGGCCcg-GGCCGCgAGCGcGCGCa -3'
miRNA:   3'- -CGCGCCGGuagCUGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 2359 0.75 0.256358
Target:  5'- aGCGC-GCCgcagcaccgGUCGACCGCGuccaCGUGCGCg -3'
miRNA:   3'- -CGCGcCGG---------UAGCUGGCGUc---GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 2431 0.71 0.424136
Target:  5'- uCGgGGCCGUCGuAgUGCAGguaCGUGUGCa -3'
miRNA:   3'- cGCgCCGGUAGC-UgGCGUC---GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 2482 0.67 0.622478
Target:  5'- -gGCGGCUAuguUCGgguacgcgcGCaGCAGCGUGUGUg -3'
miRNA:   3'- cgCGCCGGU---AGC---------UGgCGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 2787 0.67 0.652328
Target:  5'- aGCGCGGaCCGgu-GCCGCAuGUGcacuagGCGCu -3'
miRNA:   3'- -CGCGCC-GGUagcUGGCGU-CGCa-----CGCG- -5'
25521 5' -60.4 NC_005337.1 + 2837 0.69 0.505424
Target:  5'- aGCGCGGCCuccgCGGagacggaguCCGCGGagccGCGCg -3'
miRNA:   3'- -CGCGCCGGua--GCU---------GGCGUCgca-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 2883 0.67 0.619494
Target:  5'- aGCGUGGCCGgcggcgucCGGCUGCagaccacguccaggAGCG-GCGUc -3'
miRNA:   3'- -CGCGCCGGUa-------GCUGGCG--------------UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 3092 0.72 0.373694
Target:  5'- gGCGCuGGCCcuccuccgcgcgcAUCaGCagcaGCAGCGUGUGCa -3'
miRNA:   3'- -CGCG-CCGG-------------UAGcUGg---CGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 3094 0.73 0.324602
Target:  5'- gGCGaCGGCCAgcgacuccgCGACCGCGaccgcggccggccucGCGUccaGCGCg -3'
miRNA:   3'- -CGC-GCCGGUa--------GCUGGCGU---------------CGCA---CGCG- -5'
25521 5' -60.4 NC_005337.1 + 3274 0.74 0.281113
Target:  5'- cGCgGCGGCCA-CGugCaGCGGCGUcgugucguaGCGCg -3'
miRNA:   3'- -CG-CGCCGGUaGCugG-CGUCGCA---------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 3380 0.76 0.197439
Target:  5'- uGCGCGGCCAUgaGgUGCAGCG-GCGUg -3'
miRNA:   3'- -CGCGCCGGUAgcUgGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 3650 0.73 0.341408
Target:  5'- cCGCGGCCucGUCGuCCGCGcagucgggggucuuGCGUcGCGCc -3'
miRNA:   3'- cGCGCCGG--UAGCuGGCGU--------------CGCA-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 3938 0.69 0.543665
Target:  5'- -aGCGG-CGUCGAgCUGCAGCa-GCGCu -3'
miRNA:   3'- cgCGCCgGUAGCU-GGCGUCGcaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 4112 0.67 0.62845
Target:  5'- cGCGCacGGCCuccgaaagcgcgCGAgCGcCAGCGcGCGCg -3'
miRNA:   3'- -CGCG--CCGGua----------GCUgGC-GUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 4252 0.7 0.49604
Target:  5'- aGCGCGGC----GACCGCGGCc-GCGUg -3'
miRNA:   3'- -CGCGCCGguagCUGGCGUCGcaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 4473 0.69 0.533045
Target:  5'- cGCGCGGCaggugcucugCAUCG-CCagcacguGCAGCG-GCGUg -3'
miRNA:   3'- -CGCGCCG----------GUAGCuGG-------CGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 4575 0.7 0.486737
Target:  5'- cUGCuGCCG-CGGgCGCGGCGacUGCGCg -3'
miRNA:   3'- cGCGcCGGUaGCUgGCGUCGC--ACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.