miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 548 0.68 0.602601
Target:  5'- gGCGCcacuccGCCAcCGGCCGC-GCGUacgccgcggccGCGCg -3'
miRNA:   3'- -CGCGc-----CGGUaGCUGGCGuCGCA-----------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 548 0.68 0.602601
Target:  5'- gGCGCcacuccGCCAcCGGCCGC-GCGUacgccgcggccGCGCg -3'
miRNA:   3'- -CGCGc-----CGGUaGCUGGCGuCGCA-----------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 637 0.67 0.666224
Target:  5'- aGCGCGGCgaCGUCcugcacggcgacgguGACCuccugcagcaGCAGCGggcccuUGCGCg -3'
miRNA:   3'- -CGCGCCG--GUAG---------------CUGG----------CGUCGC------ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 637 0.67 0.666224
Target:  5'- aGCGCGGCgaCGUCcugcacggcgacgguGACCuccugcagcaGCAGCGggcccuUGCGCg -3'
miRNA:   3'- -CGCGCCG--GUAG---------------CUGG----------CGUCGC------ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 711 0.77 0.192713
Target:  5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3'
miRNA:   3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 711 0.77 0.192713
Target:  5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3'
miRNA:   3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 758 0.77 0.183558
Target:  5'- cCGCGGCC-UCGACgGCGGCcaugugcUGCGCg -3'
miRNA:   3'- cGCGCCGGuAGCUGgCGUCGc------ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 758 0.77 0.183558
Target:  5'- cCGCGGCC-UCGACgGCGGCcaugugcUGCGCg -3'
miRNA:   3'- cGCGCCGGuAGCUGgCGUCGc------ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 865 0.71 0.398817
Target:  5'- aGCGCGGgCG-CGGCCG-GGCGgaagaGCGCg -3'
miRNA:   3'- -CGCGCCgGUaGCUGGCgUCGCa----CGCG- -5'
25521 5' -60.4 NC_005337.1 + 865 0.71 0.398817
Target:  5'- aGCGCGGgCG-CGGCCG-GGCGgaagaGCGCg -3'
miRNA:   3'- -CGCGCCgGUaGCUGGCgUCGCa----CGCG- -5'
25521 5' -60.4 NC_005337.1 + 919 0.72 0.374487
Target:  5'- aGCGCGGCgGcggCGGCgagGCGGCGgaGCGCg -3'
miRNA:   3'- -CGCGCCGgUa--GCUGg--CGUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 919 0.72 0.374487
Target:  5'- aGCGCGGCgGcggCGGCgagGCGGCGgaGCGCg -3'
miRNA:   3'- -CGCGCCGgUa--GCUGg--CGUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 1109 0.7 0.49604
Target:  5'- aGCGCcGCCGcCGggagcaGCCGCAGCacGCGCg -3'
miRNA:   3'- -CGCGcCGGUaGC------UGGCGUCGcaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 1109 0.7 0.49604
Target:  5'- aGCGCcGCCGcCGggagcaGCCGCAGCacGCGCg -3'
miRNA:   3'- -CGCGcCGGUaGC------UGGCGUCGcaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 1162 0.69 0.505424
Target:  5'- cGCGcCGGCgGagCGGcCCGCuaGGCGgUGCGCg -3'
miRNA:   3'- -CGC-GCCGgUa-GCU-GGCG--UCGC-ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 1206 0.67 0.642384
Target:  5'- -gGCGGCCAcCGG-CGCcGCGUaCGCg -3'
miRNA:   3'- cgCGCCGGUaGCUgGCGuCGCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 1439 0.68 0.59269
Target:  5'- aGCGCGGCgG-CG-CCG-AG-GUGCGCg -3'
miRNA:   3'- -CGCGCCGgUaGCuGGCgUCgCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 1513 0.72 0.390595
Target:  5'- gGCGCGcGCCAgcgCGuCCGCcacuuCGUGUGCg -3'
miRNA:   3'- -CGCGC-CGGUa--GCuGGCGuc---GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 1576 0.66 0.700691
Target:  5'- gGCGCGGCCcagGUUGugCGCgacgauguuguccAGgG-GCGUg -3'
miRNA:   3'- -CGCGCCGG---UAGCugGCG-------------UCgCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 1663 0.71 0.436276
Target:  5'- uCGCaGGCgCGUCGcgaaccugaaccgcaGCCGCAGCGcGCGUc -3'
miRNA:   3'- cGCG-CCG-GUAGC---------------UGGCGUCGCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.