miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 52089 0.76 0.212227
Target:  5'- cGUGCGcGCCcggCGGCCGCGuGCagGUGCGCg -3'
miRNA:   3'- -CGCGC-CGGua-GCUGGCGU-CG--CACGCG- -5'
25521 5' -60.4 NC_005337.1 + 65885 0.77 0.170546
Target:  5'- cCGCGGUCGccgUGACCGaggaCGGCGUGCGCu -3'
miRNA:   3'- cGCGCCGGUa--GCUGGC----GUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 758 0.77 0.183558
Target:  5'- cCGCGGCC-UCGACgGCGGCcaugugcUGCGCg -3'
miRNA:   3'- cGCGCCGGuAGCUGgCGUCGc------ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 99316 0.77 0.192713
Target:  5'- aGCGCcgGGUCGUCGACugcuCGCAGCGcugcuucaUGCGCg -3'
miRNA:   3'- -CGCG--CCGGUAGCUG----GCGUCGC--------ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 711 0.77 0.192713
Target:  5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3'
miRNA:   3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 3380 0.76 0.197439
Target:  5'- uGCGCGGCCAUgaGgUGCAGCG-GCGUg -3'
miRNA:   3'- -CGCGCCGGUAgcUgGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 9931 0.76 0.212227
Target:  5'- aGCGCGGCCugaugCGAUCGCGccGCGUccaugaGCGCc -3'
miRNA:   3'- -CGCGCCGGua---GCUGGCGU--CGCA------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 110213 0.76 0.212227
Target:  5'- -gGCGGCCG-CGGCCGCGGCc-GCGUc -3'
miRNA:   3'- cgCGCCGGUaGCUGGCGUCGcaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 33519 0.76 0.212227
Target:  5'- uUGCaGCgGUCGAUCGCGGCGgagaGCGCg -3'
miRNA:   3'- cGCGcCGgUAGCUGGCGUCGCa---CGCG- -5'
25521 5' -60.4 NC_005337.1 + 1800 0.77 0.170546
Target:  5'- uCGUGGCCAUgGAgUGCAGCG-GCGUg -3'
miRNA:   3'- cGCGCCGGUAgCUgGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 133557 0.78 0.150687
Target:  5'- cCGCGuacCCcgCGGCCGCgGGCGUGCGCg -3'
miRNA:   3'- cGCGCc--GGuaGCUGGCG-UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 25737 0.78 0.150312
Target:  5'- gGCGCGcGCCccgcaccGUCGcGCCGUccAGCGUGCGCu -3'
miRNA:   3'- -CGCGC-CGG-------UAGC-UGGCG--UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 10347 0.84 0.066404
Target:  5'- aCGCGGCCGUCGccGCCGCAGCGguaGCa -3'
miRNA:   3'- cGCGCCGGUAGC--UGGCGUCGCacgCG- -5'
25521 5' -60.4 NC_005337.1 + 42731 0.81 0.103128
Target:  5'- aCGUGGCCA-CGGCCGCgccgAGCGUGCGg -3'
miRNA:   3'- cGCGCCGGUaGCUGGCG----UCGCACGCg -5'
25521 5' -60.4 NC_005337.1 + 133700 0.81 0.105801
Target:  5'- -gGCGGCUuccgcgCGGCCGCGGCGUacGCGCg -3'
miRNA:   3'- cgCGCCGGua----GCUGGCGUCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 99665 0.8 0.111344
Target:  5'- cGCGCGGCUGggcgCGcCCGUGGCGUGCGa -3'
miRNA:   3'- -CGCGCCGGUa---GCuGGCGUCGCACGCg -5'
25521 5' -60.4 NC_005337.1 + 25676 0.8 0.117158
Target:  5'- cCGCGGCCcUCGAagGCGGCGUcGCGCa -3'
miRNA:   3'- cGCGCCGGuAGCUggCGUCGCA-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 100693 0.8 0.123254
Target:  5'- cGCGCGGCCGacgCGA-CGCGGCGccGCGCu -3'
miRNA:   3'- -CGCGCCGGUa--GCUgGCGUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 38594 0.79 0.126412
Target:  5'- gGCGUGGCg--CGAgCGCAGCGUGgGCg -3'
miRNA:   3'- -CGCGCCGguaGCUgGCGUCGCACgCG- -5'
25521 5' -60.4 NC_005337.1 + 36485 0.78 0.146976
Target:  5'- cGCaCGGCCuuggccgCGGCCGCGGCGcucgGCGCg -3'
miRNA:   3'- -CGcGCCGGua-----GCUGGCGUCGCa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.