miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 122804 1.13 0.000527
Target:  5'- cGCGCGGCCAUCGACCGCAGCGUGCGCg -3'
miRNA:   3'- -CGCGCCGGUAGCUGGCGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 117343 0.84 0.06139
Target:  5'- gGCGaCGGCCAacgUCGGCCGCguGGaCGUGCGCa -3'
miRNA:   3'- -CGC-GCCGGU---AGCUGGCG--UC-GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 108880 0.84 0.06469
Target:  5'- aCGCGGUCGUCGACgGCGGCGgcagcgaGCGCg -3'
miRNA:   3'- cGCGCCGGUAGCUGgCGUCGCa------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 10347 0.84 0.066404
Target:  5'- aCGCGGCCGUCGccGCCGCAGCGguaGCa -3'
miRNA:   3'- cGCGCCGGUAGC--UGGCGUCGCacgCG- -5'
25521 5' -60.4 NC_005337.1 + 33577 0.83 0.077643
Target:  5'- aGCGCGGCgccgcgucgCGUCGGCCGCGcGCGcgGCGCg -3'
miRNA:   3'- -CGCGCCG---------GUAGCUGGCGU-CGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 6112 0.82 0.081779
Target:  5'- uCGCGGCCA-CGugCaGCGGCGUGCGUc -3'
miRNA:   3'- cGCGCCGGUaGCugG-CGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 2212 0.81 0.097971
Target:  5'- gGCGCGGCCcg-GGCCGCgAGCGcGCGCa -3'
miRNA:   3'- -CGCGCCGGuagCUGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 42731 0.81 0.103128
Target:  5'- aCGUGGCCA-CGGCCGCgccgAGCGUGCGg -3'
miRNA:   3'- cGCGCCGGUaGCUGGCG----UCGCACGCg -5'
25521 5' -60.4 NC_005337.1 + 133700 0.81 0.105801
Target:  5'- -gGCGGCUuccgcgCGGCCGCGGCGUacGCGCg -3'
miRNA:   3'- cgCGCCGGua----GCUGGCGUCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 36122 0.81 0.105801
Target:  5'- uGCGCaGGCacccuGUCGugCGCGGCGUGCGg -3'
miRNA:   3'- -CGCG-CCGg----UAGCugGCGUCGCACGCg -5'
25521 5' -60.4 NC_005337.1 + 133700 0.81 0.105801
Target:  5'- -gGCGGCUuccgcgCGGCCGCGGCGUacGCGCg -3'
miRNA:   3'- cgCGCCGGua----GCUGGCGUCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 99665 0.8 0.111344
Target:  5'- cGCGCGGCUGggcgCGcCCGUGGCGUGCGa -3'
miRNA:   3'- -CGCGCCGGUa---GCuGGCGUCGCACGCg -5'
25521 5' -60.4 NC_005337.1 + 90371 0.8 0.114217
Target:  5'- cGCGCGGCCucuuccCGGCCGC-GCGUGCa- -3'
miRNA:   3'- -CGCGCCGGua----GCUGGCGuCGCACGcg -5'
25521 5' -60.4 NC_005337.1 + 25676 0.8 0.117158
Target:  5'- cCGCGGCCcUCGAagGCGGCGUcGCGCa -3'
miRNA:   3'- cGCGCCGGuAGCUggCGUCGCA-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 100693 0.8 0.123254
Target:  5'- cGCGCGGCCGacgCGA-CGCGGCGccGCGCu -3'
miRNA:   3'- -CGCGCCGGUa--GCUgGCGUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 38594 0.79 0.126412
Target:  5'- gGCGUGGCg--CGAgCGCAGCGUGgGCg -3'
miRNA:   3'- -CGCGCCGguaGCUgGCGUCGCACgCG- -5'
25521 5' -60.4 NC_005337.1 + 10678 0.78 0.146976
Target:  5'- aGCGCGGCaCGUgCGGCCGCAGCu--CGCa -3'
miRNA:   3'- -CGCGCCG-GUA-GCUGGCGUCGcacGCG- -5'
25521 5' -60.4 NC_005337.1 + 36485 0.78 0.146976
Target:  5'- cGCaCGGCCuuggccgCGGCCGCGGCGcucgGCGCg -3'
miRNA:   3'- -CGcGCCGGua-----GCUGGCGUCGCa---CGCG- -5'
25521 5' -60.4 NC_005337.1 + 25737 0.78 0.150312
Target:  5'- gGCGCGcGCCccgcaccGUCGcGCCGUccAGCGUGCGCu -3'
miRNA:   3'- -CGCGC-CGG-------UAGC-UGGCG--UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 133557 0.78 0.150687
Target:  5'- cCGCGuacCCcgCGGCCGCgGGCGUGCGCg -3'
miRNA:   3'- cGCGCc--GGuaGCUGGCG-UCGCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.