Results 21 - 40 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 5' | -60.4 | NC_005337.1 | + | 133557 | 0.78 | 0.150687 |
Target: 5'- cCGCGuacCCcgCGGCCGCgGGCGUGCGCg -3' miRNA: 3'- cGCGCc--GGuaGCUGGCG-UCGCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 131011 | 0.78 | 0.158365 |
Target: 5'- aCGUGGCCGccgCGcACCGCaacgacaaGGCGUGCGCg -3' miRNA: 3'- cGCGCCGGUa--GC-UGGCG--------UCGCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 59719 | 0.78 | 0.162336 |
Target: 5'- cGCGCGGCCAgcaucacgCGcCgCGCGGCGgaGCGCg -3' miRNA: 3'- -CGCGCCGGUa-------GCuG-GCGUCGCa-CGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 1800 | 0.77 | 0.170546 |
Target: 5'- uCGUGGCCAUgGAgUGCAGCG-GCGUg -3' miRNA: 3'- cGCGCCGGUAgCUgGCGUCGCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 65885 | 0.77 | 0.170546 |
Target: 5'- cCGCGGUCGccgUGACCGaggaCGGCGUGCGCu -3' miRNA: 3'- cGCGCCGGUa--GCUGGC----GUCGCACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 758 | 0.77 | 0.183558 |
Target: 5'- cCGCGGCC-UCGACgGCGGCcaugugcUGCGCg -3' miRNA: 3'- cGCGCCGGuAGCUGgCGUCGc------ACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 758 | 0.77 | 0.183558 |
Target: 5'- cCGCGGCC-UCGACgGCGGCcaugugcUGCGCg -3' miRNA: 3'- cGCGCCGGuAGCUGgCGUCGc------ACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 38905 | 0.77 | 0.187629 |
Target: 5'- cGCGCGGCCGUCG-CUGUugccuucGGCGacucgGCGCu -3' miRNA: 3'- -CGCGCCGGUAGCuGGCG-------UCGCa----CGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 99316 | 0.77 | 0.192713 |
Target: 5'- aGCGCcgGGUCGUCGACugcuCGCAGCGcugcuucaUGCGCg -3' miRNA: 3'- -CGCG--CCGGUAGCUG----GCGUCGC--------ACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 711 | 0.77 | 0.192713 |
Target: 5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3' miRNA: 3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 711 | 0.77 | 0.192713 |
Target: 5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3' miRNA: 3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 3380 | 0.76 | 0.197439 |
Target: 5'- uGCGCGGCCAUgaGgUGCAGCG-GCGUg -3' miRNA: 3'- -CGCGCCGGUAgcUgGCGUCGCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 82059 | 0.76 | 0.197439 |
Target: 5'- aGCGCGGCCA-CGucCCGgGGCGUGauguaGCg -3' miRNA: 3'- -CGCGCCGGUaGCu-GGCgUCGCACg----CG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 82359 | 0.76 | 0.197439 |
Target: 5'- aGCGUGGCCGcCGACUGCA-CG-GCGCc -3' miRNA: 3'- -CGCGCCGGUaGCUGGCGUcGCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 132621 | 0.76 | 0.207195 |
Target: 5'- gGCgGCGGCCAagcUCGucGCCGCgGGCGcGCGCa -3' miRNA: 3'- -CG-CGCCGGU---AGC--UGGCG-UCGCaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 110213 | 0.76 | 0.212227 |
Target: 5'- -gGCGGCCG-CGGCCGCGGCc-GCGUc -3' miRNA: 3'- cgCGCCGGUaGCUGGCGUCGcaCGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 9931 | 0.76 | 0.212227 |
Target: 5'- aGCGCGGCCugaugCGAUCGCGccGCGUccaugaGCGCc -3' miRNA: 3'- -CGCGCCGGua---GCUGGCGU--CGCA------CGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 52089 | 0.76 | 0.212227 |
Target: 5'- cGUGCGcGCCcggCGGCCGCGuGCagGUGCGCg -3' miRNA: 3'- -CGCGC-CGGua-GCUGGCGU-CG--CACGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 33519 | 0.76 | 0.212227 |
Target: 5'- uUGCaGCgGUCGAUCGCGGCGgagaGCGCg -3' miRNA: 3'- cGCGcCGgUAGCUGGCGUCGCa---CGCG- -5' |
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25521 | 5' | -60.4 | NC_005337.1 | + | 12035 | 0.76 | 0.217364 |
Target: 5'- uGC-CGGUCAUCGGCgUGCggucguccGGCGUGCGCg -3' miRNA: 3'- -CGcGCCGGUAGCUG-GCG--------UCGCACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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