miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 122804 1.13 0.000527
Target:  5'- cGCGCGGCCAUCGACCGCAGCGUGCGCg -3'
miRNA:   3'- -CGCGCCGGUAGCUGGCGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 132621 0.76 0.207195
Target:  5'- gGCgGCGGCCAagcUCGucGCCGCgGGCGcGCGCa -3'
miRNA:   3'- -CG-CGCCGGU---AGC--UGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 58154 0.76 0.222608
Target:  5'- -gGCGGCCuUCG-CgCGCAagcGCGUGCGCa -3'
miRNA:   3'- cgCGCCGGuAGCuG-GCGU---CGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 89796 0.66 0.730671
Target:  5'- aCGCGGCCGcgccUCGaACUGgccucagcuCGGCGagGCGCu -3'
miRNA:   3'- cGCGCCGGU----AGC-UGGC---------GUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 2212 0.81 0.097971
Target:  5'- gGCGCGGCCcg-GGCCGCgAGCGcGCGCa -3'
miRNA:   3'- -CGCGCCGGuagCUGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 133700 0.81 0.105801
Target:  5'- -gGCGGCUuccgcgCGGCCGCGGCGUacGCGCg -3'
miRNA:   3'- cgCGCCGGua----GCUGGCGUCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 90371 0.8 0.114217
Target:  5'- cGCGCGGCCucuuccCGGCCGC-GCGUGCa- -3'
miRNA:   3'- -CGCGCCGGua----GCUGGCGuCGCACGcg -5'
25521 5' -60.4 NC_005337.1 + 10678 0.78 0.146976
Target:  5'- aGCGCGGCaCGUgCGGCCGCAGCu--CGCa -3'
miRNA:   3'- -CGCGCCG-GUA-GCUGGCGUCGcacGCG- -5'
25521 5' -60.4 NC_005337.1 + 59719 0.78 0.162336
Target:  5'- cGCGCGGCCAgcaucacgCGcCgCGCGGCGgaGCGCg -3'
miRNA:   3'- -CGCGCCGGUa-------GCuG-GCGUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 82359 0.76 0.197439
Target:  5'- aGCGUGGCCGcCGACUGCA-CG-GCGCc -3'
miRNA:   3'- -CGCGCCGGUaGCUGGCGUcGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 38905 0.77 0.187629
Target:  5'- cGCGCGGCCGUCG-CUGUugccuucGGCGacucgGCGCu -3'
miRNA:   3'- -CGCGCCGGUAGCuGGCG-------UCGCa----CGCG- -5'
25521 5' -60.4 NC_005337.1 + 131011 0.78 0.158365
Target:  5'- aCGUGGCCGccgCGcACCGCaacgacaaGGCGUGCGCg -3'
miRNA:   3'- cGCGCCGGUa--GC-UGGCG--------UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 108880 0.84 0.06469
Target:  5'- aCGCGGUCGUCGACgGCGGCGgcagcgaGCGCg -3'
miRNA:   3'- cGCGCCGGUAGCUGgCGUCGCa------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 711 0.77 0.192713
Target:  5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3'
miRNA:   3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 33577 0.83 0.077643
Target:  5'- aGCGCGGCgccgcgucgCGUCGGCCGCGcGCGcgGCGCg -3'
miRNA:   3'- -CGCGCCG---------GUAGCUGGCGU-CGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 133557 0.78 0.150687
Target:  5'- cCGCGuacCCcgCGGCCGCgGGCGUGCGCg -3'
miRNA:   3'- cGCGCc--GGuaGCUGGCG-UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 82059 0.76 0.197439
Target:  5'- aGCGCGGCCA-CGucCCGgGGCGUGauguaGCg -3'
miRNA:   3'- -CGCGCCGGUaGCu-GGCgUCGCACg----CG- -5'
25521 5' -60.4 NC_005337.1 + 12035 0.76 0.217364
Target:  5'- uGC-CGGUCAUCGGCgUGCggucguccGGCGUGCGCg -3'
miRNA:   3'- -CGcGCCGGUAGCUG-GCG--------UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 6112 0.82 0.081779
Target:  5'- uCGCGGCCA-CGugCaGCGGCGUGCGUc -3'
miRNA:   3'- cGCGCCGGUaGCugG-CGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 36122 0.81 0.105801
Target:  5'- uGCGCaGGCacccuGUCGugCGCGGCGUGCGg -3'
miRNA:   3'- -CGCG-CCGg----UAGCugGCGUCGCACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.