miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 133700 0.81 0.105801
Target:  5'- -gGCGGCUuccgcgCGGCCGCGGCGUacGCGCg -3'
miRNA:   3'- cgCGCCGGua----GCUGGCGUCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 133700 0.81 0.105801
Target:  5'- -gGCGGCUuccgcgCGGCCGCGGCGUacGCGCg -3'
miRNA:   3'- cgCGCCGGua----GCUGGCGUCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 133557 0.78 0.150687
Target:  5'- cCGCGuacCCcgCGGCCGCgGGCGUGCGCg -3'
miRNA:   3'- cGCGCc--GGuaGCUGGCG-UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 133557 0.78 0.150687
Target:  5'- cCGCGuacCCcgCGGCCGCgGGCGUGCGCg -3'
miRNA:   3'- cGCGCc--GGuaGCUGGCG-UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 133508 0.72 0.366604
Target:  5'- gGCGCGcagcacauggccGCCGUCGagGCCGCGGgCGccGCGCu -3'
miRNA:   3'- -CGCGC------------CGGUAGC--UGGCGUC-GCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 133508 0.72 0.366604
Target:  5'- gGCGCGcagcacauggccGCCGUCGagGCCGCGGgCGccGCGCu -3'
miRNA:   3'- -CGCGC------------CGGUAGC--UGGCGUC-GCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 133162 0.73 0.336227
Target:  5'- uGCuGCGGCUGcuccCGGCgGCGGCGcUGCGCc -3'
miRNA:   3'- -CG-CGCCGGUa---GCUGgCGUCGC-ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 133162 0.73 0.336227
Target:  5'- uGCuGCGGCUGcuccCGGCgGCGGCGcUGCGCc -3'
miRNA:   3'- -CG-CGCCGGUa---GCUGgCGUCGC-ACGCG- -5'
25521 5' -60.4 NC_005337.1 + 132621 0.76 0.207195
Target:  5'- gGCgGCGGCCAagcUCGucGCCGCgGGCGcGCGCa -3'
miRNA:   3'- -CG-CGCCGGU---AGC--UGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 132428 0.66 0.708488
Target:  5'- aCGCGGCCAcCaACUGCGcgcucgccaaagucGCGaGCGCg -3'
miRNA:   3'- cGCGCCGGUaGcUGGCGU--------------CGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 132170 0.67 0.632431
Target:  5'- aCGCGuGCCugaccgGGCuCGCGGCGcGCGCc -3'
miRNA:   3'- cGCGC-CGGuag---CUG-GCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 132068 0.69 0.5026
Target:  5'- uCGCGGCCcgggccgcgcccgcGUCcGCCGCcugcGcCGUGCGCg -3'
miRNA:   3'- cGCGCCGG--------------UAGcUGGCGu---C-GCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 131899 0.73 0.307729
Target:  5'- gGCGCGcacguggacGCgGUCGACCGguGCugcgGCGCg -3'
miRNA:   3'- -CGCGC---------CGgUAGCUGGCguCGca--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 131698 0.66 0.721073
Target:  5'- cGCGUGGCuaaCAUCGAgaaccgcaagaUCGCGggcagcuccGCGUGcCGCa -3'
miRNA:   3'- -CGCGCCG---GUAGCU-----------GGCGU---------CGCAC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 131423 0.66 0.711402
Target:  5'- cGCGCGGCuCcgCGGacuccgucuCCGCGGaGgccGCGCu -3'
miRNA:   3'- -CGCGCCG-GuaGCU---------GGCGUCgCa--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 131376 0.71 0.44154
Target:  5'- cGCGCGGUacgucuUCGACCGCGGggcCGUGauCGUg -3'
miRNA:   3'- -CGCGCCGgu----AGCUGGCGUC---GCAC--GCG- -5'
25521 5' -60.4 NC_005337.1 + 131190 0.71 0.415589
Target:  5'- uCGCuGGCCGUCG-CCG-AG-GUGCGCg -3'
miRNA:   3'- cGCG-CCGGUAGCuGGCgUCgCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 131011 0.78 0.158365
Target:  5'- aCGUGGCCGccgCGcACCGCaacgacaaGGCGUGCGCg -3'
miRNA:   3'- cGCGCCGGUa--GC-UGGCG--------UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 130962 0.75 0.262374
Target:  5'- gGCGUGGCCGUggaCGugCGCAaCGcGCGCu -3'
miRNA:   3'- -CGCGCCGGUA---GCugGCGUcGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 130856 0.67 0.669196
Target:  5'- aGCGCGGguaCGUCaACCGCuccuacuaccagauGGCGcacGCGCg -3'
miRNA:   3'- -CGCGCCg--GUAGcUGGCG--------------UCGCa--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.