miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 86337 0.67 0.626196
Target:  5'- aGCGUcAgGCCGGC-CuCCUCCgcaacGACCCGg -3'
miRNA:   3'- -UGUA-UgCGGCCGaGcGGAGG-----CUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 45501 0.67 0.626196
Target:  5'- -gGUACGCgCGGaccugCGCCUCCGGgucCUCGg -3'
miRNA:   3'- ugUAUGCG-GCCga---GCGGAGGCU---GGGC- -5'
25522 3' -60.7 NC_005337.1 + 118346 0.67 0.61626
Target:  5'- gGCAUGaagccCGCCGucuucggucGCUCuGCCUCCGGCgCCc -3'
miRNA:   3'- -UGUAU-----GCGGC---------CGAG-CGGAGGCUG-GGc -5'
25522 3' -60.7 NC_005337.1 + 83878 0.67 0.613281
Target:  5'- cACcgACGCgCGGCgCGCCcCCGcgccaggcgcccguGCCCGg -3'
miRNA:   3'- -UGuaUGCG-GCCGaGCGGaGGC--------------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 119026 0.67 0.606336
Target:  5'- aACGUucgGCGCCGGCgcCGCCaggaccggUUCGACCUc -3'
miRNA:   3'- -UGUA---UGCGGCCGa-GCGG--------AGGCUGGGc -5'
25522 3' -60.7 NC_005337.1 + 60889 0.68 0.59643
Target:  5'- uGCGggcGCGCCGaGUaCGCCUCCGAgaguuCCUGc -3'
miRNA:   3'- -UGUa--UGCGGC-CGaGCGGAGGCU-----GGGC- -5'
25522 3' -60.7 NC_005337.1 + 12046 0.68 0.586548
Target:  5'- gGCGUGCGgucguCCGGCgugcgCGCCgacacgUCCGcGCCCGc -3'
miRNA:   3'- -UGUAUGC-----GGCCGa----GCGG------AGGC-UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 77001 0.68 0.586548
Target:  5'- cGCGcGCGCCGGCcccgcgCgGCC-CCGuGCCCGa -3'
miRNA:   3'- -UGUaUGCGGCCGa-----G-CGGaGGC-UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 34665 0.68 0.586548
Target:  5'- ---cACGCUGGUgcucUCGCCgUCCaGGCCCa -3'
miRNA:   3'- uguaUGCGGCCG----AGCGG-AGG-CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 1890 0.68 0.586548
Target:  5'- cUAUGCGCacuCGGCg-GCCUCCGGgaacCCCGc -3'
miRNA:   3'- uGUAUGCG---GCCGagCGGAGGCU----GGGC- -5'
25522 3' -60.7 NC_005337.1 + 64742 0.68 0.570805
Target:  5'- ---cGCGCCGGUUCccugcgaucgacgagGCCUCCGGCgaGg -3'
miRNA:   3'- uguaUGCGGCCGAG---------------CGGAGGCUGggC- -5'
25522 3' -60.7 NC_005337.1 + 46249 0.68 0.566885
Target:  5'- cACGUGCGCCGGCacauCCUgCUGACCa- -3'
miRNA:   3'- -UGUAUGCGGCCGagc-GGA-GGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 133690 0.68 0.566885
Target:  5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3'
miRNA:   3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 133690 0.68 0.566885
Target:  5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3'
miRNA:   3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 34854 0.68 0.557115
Target:  5'- uAUAUGCGgCGGCgCGCCauccUCCGACgUGa -3'
miRNA:   3'- -UGUAUGCgGCCGaGCGG----AGGCUGgGC- -5'
25522 3' -60.7 NC_005337.1 + 35670 0.68 0.556141
Target:  5'- aGC-UGCGCCaggaggaGGC-CGCCUUCGACCgGc -3'
miRNA:   3'- -UGuAUGCGG-------CCGaGCGGAGGCUGGgC- -5'
25522 3' -60.7 NC_005337.1 + 66704 0.68 0.547394
Target:  5'- gGCAcACGCUGGCcaacgaCGCCuUCCGccucaACCCGg -3'
miRNA:   3'- -UGUaUGCGGCCGa-----GCGG-AGGC-----UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 16688 0.68 0.547394
Target:  5'- aGCAUcucGCGCaCGGCg-GCCUCCGcuGCCgGg -3'
miRNA:   3'- -UGUA---UGCG-GCCGagCGGAGGC--UGGgC- -5'
25522 3' -60.7 NC_005337.1 + 45116 0.68 0.547394
Target:  5'- ---gGCGCCacacggGGCUCGCCUCaCGccGCUCGa -3'
miRNA:   3'- uguaUGCGG------CCGAGCGGAG-GC--UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 57104 0.68 0.547394
Target:  5'- cGCGggugGCGCCGGCaguaccccguggUCGCCgCCaGCCUGg -3'
miRNA:   3'- -UGUa---UGCGGCCG------------AGCGGaGGcUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.