miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 126044 0.66 0.68564
Target:  5'- uCAUgcGCGCCGGUgcggacgCGaCCcuugCCGACCUGg -3'
miRNA:   3'- uGUA--UGCGGCCGa------GC-GGa---GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 126131 0.66 0.675791
Target:  5'- cCGUGCGCgCGGCcaugcccggCGUCcCCGACUCGc -3'
miRNA:   3'- uGUAUGCG-GCCGa--------GCGGaGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 47510 0.66 0.675791
Target:  5'- uGCGgACGCCGGagaUgGCCaUCGugCCGg -3'
miRNA:   3'- -UGUaUGCGGCCg--AgCGGaGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 131039 0.66 0.675791
Target:  5'- gGCGUGCGCg----CGCCUCCuGGCCCu -3'
miRNA:   3'- -UGUAUGCGgccgaGCGGAGG-CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 9762 0.66 0.675791
Target:  5'- gGCcgGCGCCGGgUUGgCaCCGGCCUc -3'
miRNA:   3'- -UGuaUGCGGCCgAGCgGaGGCUGGGc -5'
25522 3' -60.7 NC_005337.1 + 109469 0.66 0.675791
Target:  5'- uGCGUGCGCgcgugGGCgCGCUUCCGGauCUCGg -3'
miRNA:   3'- -UGUAUGCGg----CCGaGCGGAGGCU--GGGC- -5'
25522 3' -60.7 NC_005337.1 + 15865 0.66 0.665908
Target:  5'- gGCGgcuCGCCGGcCUCGCUcaugaccggguUCCGcuGCCCc -3'
miRNA:   3'- -UGUau-GCGGCC-GAGCGG-----------AGGC--UGGGc -5'
25522 3' -60.7 NC_005337.1 + 40730 0.66 0.665908
Target:  5'- -gGUGCGCCGGaCUCGCgUCucugggugcaCGGCCg- -3'
miRNA:   3'- ugUAUGCGGCC-GAGCGgAG----------GCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 85871 0.66 0.665908
Target:  5'- -aGUACGCCGag-CGUCUCCGugCgCGg -3'
miRNA:   3'- ugUAUGCGGCcgaGCGGAGGCugG-GC- -5'
25522 3' -60.7 NC_005337.1 + 68180 0.66 0.665908
Target:  5'- cGCAgACGCCGcacagCGCCUCCGccGCCgCGg -3'
miRNA:   3'- -UGUaUGCGGCcga--GCGGAGGC--UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 97719 0.66 0.665908
Target:  5'- -gGUGgGgUGGCUCGCCggcgCCG-CCCa -3'
miRNA:   3'- ugUAUgCgGCCGAGCGGa---GGCuGGGc -5'
25522 3' -60.7 NC_005337.1 + 64177 0.66 0.664918
Target:  5'- cACGcugGCGCCGcaaucgcGCUCGCgCUCCGACagcuCGa -3'
miRNA:   3'- -UGUa--UGCGGC-------CGAGCG-GAGGCUGg---GC- -5'
25522 3' -60.7 NC_005337.1 + 60930 0.67 0.655999
Target:  5'- gGCGUACaCgCGGUUCGUCUCCuuGGCCUu -3'
miRNA:   3'- -UGUAUGcG-GCCGAGCGGAGG--CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 131374 0.67 0.655999
Target:  5'- ---cGCGCgCGGUaCGUCUUCGACCgCGg -3'
miRNA:   3'- uguaUGCG-GCCGaGCGGAGGCUGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 64529 0.67 0.646073
Target:  5'- aGCAUGCaCCGcuuaaGCUCGCCcggcaCCGugCCGc -3'
miRNA:   3'- -UGUAUGcGGC-----CGAGCGGa----GGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 133027 0.67 0.646073
Target:  5'- gGCugauCGcCCGGCUCGUCguguaCgGGCCCGa -3'
miRNA:   3'- -UGuau-GC-GGCCGAGCGGa----GgCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 39937 0.67 0.646073
Target:  5'- uACGUGCG-CGGCgggCGCCUCgCGcgggcGCUCGa -3'
miRNA:   3'- -UGUAUGCgGCCGa--GCGGAG-GC-----UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 51861 0.67 0.643093
Target:  5'- aGCAgAUGCUGGCcuccaucuucgccaUCGCCUCCuccGCCCc -3'
miRNA:   3'- -UGUaUGCGGCCG--------------AGCGGAGGc--UGGGc -5'
25522 3' -60.7 NC_005337.1 + 120372 0.67 0.636136
Target:  5'- ---gAC-CCGGCgCGCCUgCCGGCUCGu -3'
miRNA:   3'- uguaUGcGGCCGaGCGGA-GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 45501 0.67 0.626196
Target:  5'- -gGUACGCgCGGaccugCGCCUCCGGgucCUCGg -3'
miRNA:   3'- ugUAUGCG-GCCga---GCGGAGGCU---GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.