Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25522 | 3' | -60.7 | NC_005337.1 | + | 115178 | 0.69 | 0.499703 |
Target: 5'- cGCGgACGCCGGCgucCGCCUCUucaACUCGc -3' miRNA: 3'- -UGUaUGCGGCCGa--GCGGAGGc--UGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 79993 | 0.69 | 0.499703 |
Target: 5'- aGCAUGuuuuuucgucgcCGCgCGGCgcuaagCGCCgcacCCGGCCCGg -3' miRNA: 3'- -UGUAU------------GCG-GCCGa-----GCGGa---GGCUGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 127888 | 0.69 | 0.509103 |
Target: 5'- cGCGcgGCGCCGGCgagCGCgUgCGGgCCGa -3' miRNA: 3'- -UGUa-UGCGGCCGa--GCGgAgGCUgGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 19700 | 0.69 | 0.512884 |
Target: 5'- gGCGUacaGCGCCGGCgccaucugcggccgCGCCUCCacgauGGCCUc -3' miRNA: 3'- -UGUA---UGCGGCCGa-------------GCGGAGG-----CUGGGc -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 18727 | 0.69 | 0.518577 |
Target: 5'- uGCGgcGCGCUGGC--GCCUCUGACCgGa -3' miRNA: 3'- -UGUa-UGCGGCCGagCGGAGGCUGGgC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 93714 | 0.69 | 0.518577 |
Target: 5'- ---cGCGgCGGCUCgacgcgGCCUCCagcGACCCGc -3' miRNA: 3'- uguaUGCgGCCGAG------CGGAGG---CUGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 10705 | 0.69 | 0.537727 |
Target: 5'- cCAggaGCUcgGGCUCGuCCUCCGACCgGc -3' miRNA: 3'- uGUaugCGG--CCGAGC-GGAGGCUGGgC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 44223 | 0.69 | 0.537727 |
Target: 5'- uCAU-CGaCCGGCUgGUCUCCGugggcgggucGCCCGa -3' miRNA: 3'- uGUAuGC-GGCCGAgCGGAGGC----------UGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 45116 | 0.68 | 0.547394 |
Target: 5'- ---gGCGCCacacggGGCUCGCCUCaCGccGCUCGa -3' miRNA: 3'- uguaUGCGG------CCGAGCGGAG-GC--UGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 66704 | 0.68 | 0.547394 |
Target: 5'- gGCAcACGCUGGCcaacgaCGCCuUCCGccucaACCCGg -3' miRNA: 3'- -UGUaUGCGGCCGa-----GCGG-AGGC-----UGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 57104 | 0.68 | 0.547394 |
Target: 5'- cGCGggugGCGCCGGCaguaccccguggUCGCCgCCaGCCUGg -3' miRNA: 3'- -UGUa---UGCGGCCG------------AGCGGaGGcUGGGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 16688 | 0.68 | 0.547394 |
Target: 5'- aGCAUcucGCGCaCGGCg-GCCUCCGcuGCCgGg -3' miRNA: 3'- -UGUA---UGCG-GCCGagCGGAGGC--UGGgC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 35670 | 0.68 | 0.556141 |
Target: 5'- aGC-UGCGCCaggaggaGGC-CGCCUUCGACCgGc -3' miRNA: 3'- -UGuAUGCGG-------CCGaGCGGAGGCUGGgC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 34854 | 0.68 | 0.557115 |
Target: 5'- uAUAUGCGgCGGCgCGCCauccUCCGACgUGa -3' miRNA: 3'- -UGUAUGCgGCCGaGCGG----AGGCUGgGC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 133690 | 0.68 | 0.566885 |
Target: 5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3' miRNA: 3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 133690 | 0.68 | 0.566885 |
Target: 5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3' miRNA: 3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 46249 | 0.68 | 0.566885 |
Target: 5'- cACGUGCGCCGGCacauCCUgCUGACCa- -3' miRNA: 3'- -UGUAUGCGGCCGagc-GGA-GGCUGGgc -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 64742 | 0.68 | 0.570805 |
Target: 5'- ---cGCGCCGGUUCccugcgaucgacgagGCCUCCGGCgaGg -3' miRNA: 3'- uguaUGCGGCCGAG---------------CGGAGGCUGggC- -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 34665 | 0.68 | 0.586548 |
Target: 5'- ---cACGCUGGUgcucUCGCCgUCCaGGCCCa -3' miRNA: 3'- uguaUGCGGCCG----AGCGG-AGG-CUGGGc -5' |
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25522 | 3' | -60.7 | NC_005337.1 | + | 77001 | 0.68 | 0.586548 |
Target: 5'- cGCGcGCGCCGGCcccgcgCgGCC-CCGuGCCCGa -3' miRNA: 3'- -UGUaUGCGGCCGa-----G-CGGaGGC-UGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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