miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 43322 0.67 0.626196
Target:  5'- cACGUACuGCUcggGGCUCGCCgacgcgCUGGCCg- -3'
miRNA:   3'- -UGUAUG-CGG---CCGAGCGGa-----GGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 44223 0.69 0.537727
Target:  5'- uCAU-CGaCCGGCUgGUCUCCGugggcgggucGCCCGa -3'
miRNA:   3'- uGUAuGC-GGCCGAgCGGAGGC----------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 45058 0.7 0.471984
Target:  5'- aGCuggGCGCCGGC-CgGCCggagaUCCGugCCGa -3'
miRNA:   3'- -UGua-UGCGGCCGaG-CGG-----AGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 45116 0.68 0.547394
Target:  5'- ---gGCGCCacacggGGCUCGCCUCaCGccGCUCGa -3'
miRNA:   3'- uguaUGCGG------CCGAGCGGAG-GC--UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 45501 0.67 0.626196
Target:  5'- -gGUACGCgCGGaccugCGCCUCCGGgucCUCGg -3'
miRNA:   3'- ugUAUGCG-GCCga---GCGGAGGCU---GGGC- -5'
25522 3' -60.7 NC_005337.1 + 46249 0.68 0.566885
Target:  5'- cACGUGCGCCGGCacauCCUgCUGACCa- -3'
miRNA:   3'- -UGUAUGCGGCCGagc-GGA-GGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 47510 0.66 0.675791
Target:  5'- uGCGgACGCCGGagaUgGCCaUCGugCCGg -3'
miRNA:   3'- -UGUaUGCGGCCg--AgCGGaGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 50411 0.66 0.709092
Target:  5'- ---cGCGUCGGUgacggagcggcgggCGCUUCCG-CCCGg -3'
miRNA:   3'- uguaUGCGGCCGa-------------GCGGAGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 50982 0.69 0.49038
Target:  5'- gGCGggGCGCCGcGCguUCGUCgUCGGCCCGg -3'
miRNA:   3'- -UGUa-UGCGGC-CG--AGCGGaGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 51861 0.67 0.643093
Target:  5'- aGCAgAUGCUGGCcuccaucuucgccaUCGCCUCCuccGCCCc -3'
miRNA:   3'- -UGUaUGCGGCCG--------------AGCGGAGGc--UGGGc -5'
25522 3' -60.7 NC_005337.1 + 57016 0.66 0.705204
Target:  5'- cACGUAcuccCGCCGGCUgGaCgUCCGGCUg- -3'
miRNA:   3'- -UGUAU----GCGGCCGAgC-GgAGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 57104 0.68 0.547394
Target:  5'- cGCGggugGCGCCGGCaguaccccguggUCGCCgCCaGCCUGg -3'
miRNA:   3'- -UGUa---UGCGGCCG------------AGCGGaGGcUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 59270 0.72 0.362031
Target:  5'- cGCGUcaGCGgCGGC-CGCCUCguguacgugguCGACCCGg -3'
miRNA:   3'- -UGUA--UGCgGCCGaGCGGAG-----------GCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 59728 0.66 0.705204
Target:  5'- aGCAUcacGCGCCGcGCggcggagcgCGUCUCCGcgaGCUCGg -3'
miRNA:   3'- -UGUA---UGCGGC-CGa--------GCGGAGGC---UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 60889 0.68 0.59643
Target:  5'- uGCGggcGCGCCGaGUaCGCCUCCGAgaguuCCUGc -3'
miRNA:   3'- -UGUa--UGCGGC-CGaGCGGAGGCU-----GGGC- -5'
25522 3' -60.7 NC_005337.1 + 60930 0.67 0.655999
Target:  5'- gGCGUACaCgCGGUUCGUCUCCuuGGCCUu -3'
miRNA:   3'- -UGUAUGcG-GCCGAGCGGAGG--CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 62658 0.66 0.714903
Target:  5'- gACGUugGCCGGCauggccacgUUGCCgUUGACCa- -3'
miRNA:   3'- -UGUAugCGGCCG---------AGCGGaGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 64177 0.66 0.664918
Target:  5'- cACGcugGCGCCGcaaucgcGCUCGCgCUCCGACagcuCGa -3'
miRNA:   3'- -UGUa--UGCGGC-------CGAGCG-GAGGCUGg---GC- -5'
25522 3' -60.7 NC_005337.1 + 64529 0.67 0.646073
Target:  5'- aGCAUGCaCCGcuuaaGCUCGCCcggcaCCGugCCGc -3'
miRNA:   3'- -UGUAUGcGGC-----CGAGCGGa----GGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 64742 0.68 0.570805
Target:  5'- ---cGCGCCGGUUCccugcgaucgacgagGCCUCCGGCgaGg -3'
miRNA:   3'- uguaUGCGGCCGAG---------------CGGAGGCUGggC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.