miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 97719 0.66 0.665908
Target:  5'- -gGUGgGgUGGCUCGCCggcgCCG-CCCa -3'
miRNA:   3'- ugUAUgCgGCCGAGCGGa---GGCuGGGc -5'
25522 3' -60.7 NC_005337.1 + 68180 0.66 0.665908
Target:  5'- cGCAgACGCCGcacagCGCCUCCGccGCCgCGg -3'
miRNA:   3'- -UGUaUGCGGCcga--GCGGAGGC--UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 116330 0.66 0.705204
Target:  5'- uGCGUGCugcuGCgGGCgcagCGCCgggCCauGACCCGc -3'
miRNA:   3'- -UGUAUG----CGgCCGa---GCGGa--GG--CUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 109469 0.66 0.675791
Target:  5'- uGCGUGCGCgcgugGGCgCGCUUCCGGauCUCGg -3'
miRNA:   3'- -UGUAUGCGg----CCGaGCGGAGGCU--GGGC- -5'
25522 3' -60.7 NC_005337.1 + 115418 0.66 0.68564
Target:  5'- ---gACGCCGuCUCGCCggCCG-UCCGg -3'
miRNA:   3'- uguaUGCGGCcGAGCGGa-GGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 62658 0.66 0.714903
Target:  5'- gACGUugGCCGGCauggccacgUUGCCgUUGACCa- -3'
miRNA:   3'- -UGUAugCGGCCG---------AGCGGaGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 57016 0.66 0.705204
Target:  5'- cACGUAcuccCGCCGGCUgGaCgUCCGGCUg- -3'
miRNA:   3'- -UGUAU----GCGGCCGAgC-GgAGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 87919 0.66 0.695447
Target:  5'- cGCcUGCGCCGGCgcuucgugcaCGCCggCGgcaGCCCGg -3'
miRNA:   3'- -UGuAUGCGGCCGa---------GCGGagGC---UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 37013 0.66 0.705204
Target:  5'- cACGUcgaaGCGCCGGCUCaCCgcCCGACa-- -3'
miRNA:   3'- -UGUA----UGCGGCCGAGcGGa-GGCUGggc -5'
25522 3' -60.7 NC_005337.1 + 59728 0.66 0.705204
Target:  5'- aGCAUcacGCGCCGcGCggcggagcgCGUCUCCGcgaGCUCGg -3'
miRNA:   3'- -UGUA---UGCGGC-CGa--------GCGGAGGC---UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 64177 0.66 0.664918
Target:  5'- cACGcugGCGCCGcaaucgcGCUCGCgCUCCGACagcuCGa -3'
miRNA:   3'- -UGUa--UGCGGC-------CGAGCG-GAGGCUGg---GC- -5'
25522 3' -60.7 NC_005337.1 + 84956 0.66 0.709092
Target:  5'- cGCGUGuCGCUGGauggccuccagguaUCGCCggUCCG-CCCGg -3'
miRNA:   3'- -UGUAU-GCGGCCg-------------AGCGG--AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 45501 0.67 0.626196
Target:  5'- -gGUACGCgCGGaccugCGCCUCCGGgucCUCGg -3'
miRNA:   3'- ugUAUGCG-GCCga---GCGGAGGCU---GGGC- -5'
25522 3' -60.7 NC_005337.1 + 120372 0.67 0.636136
Target:  5'- ---gAC-CCGGCgCGCCUgCCGGCUCGu -3'
miRNA:   3'- uguaUGcGGCCGaGCGGA-GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 83878 0.67 0.613281
Target:  5'- cACcgACGCgCGGCgCGCCcCCGcgccaggcgcccguGCCCGg -3'
miRNA:   3'- -UGuaUGCG-GCCGaGCGGaGGC--------------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 39937 0.67 0.646073
Target:  5'- uACGUGCG-CGGCgggCGCCUCgCGcgggcGCUCGa -3'
miRNA:   3'- -UGUAUGCgGCCGa--GCGGAG-GC-----UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 131374 0.67 0.655999
Target:  5'- ---cGCGCgCGGUaCGUCUUCGACCgCGg -3'
miRNA:   3'- uguaUGCG-GCCGaGCGGAGGCUGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 86337 0.67 0.626196
Target:  5'- aGCGUcAgGCCGGC-CuCCUCCgcaacGACCCGg -3'
miRNA:   3'- -UGUA-UgCGGCCGaGcGGAGG-----CUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 60930 0.67 0.655999
Target:  5'- gGCGUACaCgCGGUUCGUCUCCuuGGCCUu -3'
miRNA:   3'- -UGUAUGcG-GCCGAGCGGAGG--CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 119026 0.67 0.606336
Target:  5'- aACGUucgGCGCCGGCgcCGCCaggaccggUUCGACCUc -3'
miRNA:   3'- -UGUA---UGCGGCCGa-GCGG--------AGGCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.