miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 121294 1.07 0.001384
Target:  5'- gACAUACGCCGGCUCGCCUCCGACCCGc -3'
miRNA:   3'- -UGUAUGCGGCCGAGCGGAGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 102039 0.79 0.121629
Target:  5'- cGCGUACGCCuGCUucccggagcaCGCCUCCGACCUc -3'
miRNA:   3'- -UGUAUGCGGcCGA----------GCGGAGGCUGGGc -5'
25522 3' -60.7 NC_005337.1 + 133577 0.77 0.181127
Target:  5'- gGCGUGCGCgCGaGCuUCGCCUCCGcgcgcaaggGCCCGc -3'
miRNA:   3'- -UGUAUGCG-GC-CG-AGCGGAGGC---------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133577 0.77 0.181127
Target:  5'- gGCGUGCGCgCGaGCuUCGCCUCCGcgcgcaaggGCCCGc -3'
miRNA:   3'- -UGUAUGCG-GC-CG-AGCGGAGGC---------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 66034 0.76 0.190163
Target:  5'- cCAcGCGCCGGC-CGCgCUCCGgaACCCGg -3'
miRNA:   3'- uGUaUGCGGCCGaGCG-GAGGC--UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 42419 0.76 0.214498
Target:  5'- -uGUGCGCCGGCUUcggcgugaGCUUCCGGgCCGa -3'
miRNA:   3'- ugUAUGCGGCCGAG--------CGGAGGCUgGGC- -5'
25522 3' -60.7 NC_005337.1 + 133184 0.74 0.27747
Target:  5'- gGCGcUGCGCCGGCUguaGCCcgcUCCGuCCCGc -3'
miRNA:   3'- -UGU-AUGCGGCCGAg--CGG---AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133184 0.74 0.27747
Target:  5'- gGCGcUGCGCCGGCUguaGCCcgcUCCGuCCCGc -3'
miRNA:   3'- -UGU-AUGCGGCCGAg--CGG---AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 29674 0.73 0.310652
Target:  5'- cGCGgugGCGCCGuauGCUCGCCgCCGACgaCCGg -3'
miRNA:   3'- -UGUa--UGCGGC---CGAGCGGaGGCUG--GGC- -5'
25522 3' -60.7 NC_005337.1 + 103367 0.72 0.362031
Target:  5'- cAUcgGCGCagGGCUCGCCUgccgucgcuaCGACCCGa -3'
miRNA:   3'- -UGuaUGCGg-CCGAGCGGAg---------GCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 59270 0.72 0.362031
Target:  5'- cGCGUcaGCGgCGGC-CGCCUCguguacgugguCGACCCGg -3'
miRNA:   3'- -UGUA--UGCgGCCGaGCGGAG-----------GCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 77416 0.71 0.419026
Target:  5'- cCAUGCGCUGGCggugcaugCGCaCgaagCCGugCCGg -3'
miRNA:   3'- uGUAUGCGGCCGa-------GCG-Ga---GGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 118783 0.7 0.445065
Target:  5'- ---gACGCCGGCggcggCGCCgUCGugCCGc -3'
miRNA:   3'- uguaUGCGGCCGa----GCGGaGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 115611 0.7 0.453943
Target:  5'- gGC-UGCGCgGGUaCGCCaccgCCGACCUGg -3'
miRNA:   3'- -UGuAUGCGgCCGaGCGGa---GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 115498 0.7 0.453943
Target:  5'- -gGUGCGCCGGcCUCGCgaggucgaCGACCUGg -3'
miRNA:   3'- ugUAUGCGGCC-GAGCGgag-----GCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 2656 0.7 0.453943
Target:  5'- ---gGCGCCGGC-CGCCUCC-ACgCUGa -3'
miRNA:   3'- uguaUGCGGCCGaGCGGAGGcUG-GGC- -5'
25522 3' -60.7 NC_005337.1 + 45058 0.7 0.471984
Target:  5'- aGCuggGCGCCGGC-CgGCCggagaUCCGugCCGa -3'
miRNA:   3'- -UGua-UGCGGCCGaG-CGG-----AGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 33524 0.7 0.481139
Target:  5'- cCGUGCGCCGGCUgcacgCGUCgucgCCGACgUGc -3'
miRNA:   3'- uGUAUGCGGCCGA-----GCGGa---GGCUGgGC- -5'
25522 3' -60.7 NC_005337.1 + 50982 0.69 0.49038
Target:  5'- gGCGggGCGCCGcGCguUCGUCgUCGGCCCGg -3'
miRNA:   3'- -UGUa-UGCGGC-CG--AGCGGaGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 115178 0.69 0.499703
Target:  5'- cGCGgACGCCGGCgucCGCCUCUucaACUCGc -3'
miRNA:   3'- -UGUaUGCGGCCGa--GCGGAGGc--UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.