miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 86337 0.67 0.626196
Target:  5'- aGCGUcAgGCCGGC-CuCCUCCgcaacGACCCGg -3'
miRNA:   3'- -UGUA-UgCGGCCGaGcGGAGG-----CUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 45116 0.68 0.547394
Target:  5'- ---gGCGCCacacggGGCUCGCCUCaCGccGCUCGa -3'
miRNA:   3'- uguaUGCGG------CCGAGCGGAG-GC--UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 34854 0.68 0.557115
Target:  5'- uAUAUGCGgCGGCgCGCCauccUCCGACgUGa -3'
miRNA:   3'- -UGUAUGCgGCCGaGCGG----AGGCUGgGC- -5'
25522 3' -60.7 NC_005337.1 + 133690 0.68 0.566885
Target:  5'- gGCGUuCGCCGGCg-GCUUCCGcgcgGCCgCGg -3'
miRNA:   3'- -UGUAuGCGGCCGagCGGAGGC----UGG-GC- -5'
25522 3' -60.7 NC_005337.1 + 64742 0.68 0.570805
Target:  5'- ---cGCGCCGGUUCccugcgaucgacgagGCCUCCGGCgaGg -3'
miRNA:   3'- uguaUGCGGCCGAG---------------CGGAGGCUGggC- -5'
25522 3' -60.7 NC_005337.1 + 34665 0.68 0.586548
Target:  5'- ---cACGCUGGUgcucUCGCCgUCCaGGCCCa -3'
miRNA:   3'- uguaUGCGGCCG----AGCGG-AGG-CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 77001 0.68 0.586548
Target:  5'- cGCGcGCGCCGGCcccgcgCgGCC-CCGuGCCCGa -3'
miRNA:   3'- -UGUaUGCGGCCGa-----G-CGGaGGC-UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 118346 0.67 0.61626
Target:  5'- gGCAUGaagccCGCCGucuucggucGCUCuGCCUCCGGCgCCc -3'
miRNA:   3'- -UGUAU-----GCGGC---------CGAG-CGGAGGCUG-GGc -5'
25522 3' -60.7 NC_005337.1 + 45501 0.67 0.626196
Target:  5'- -gGUACGCgCGGaccugCGCCUCCGGgucCUCGg -3'
miRNA:   3'- ugUAUGCG-GCCga---GCGGAGGCU---GGGC- -5'
25522 3' -60.7 NC_005337.1 + 16688 0.68 0.547394
Target:  5'- aGCAUcucGCGCaCGGCg-GCCUCCGcuGCCgGg -3'
miRNA:   3'- -UGUA---UGCG-GCCGagCGGAGGC--UGGgC- -5'
25522 3' -60.7 NC_005337.1 + 66704 0.68 0.547394
Target:  5'- gGCAcACGCUGGCcaacgaCGCCuUCCGccucaACCCGg -3'
miRNA:   3'- -UGUaUGCGGCCGa-----GCGG-AGGC-----UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 10705 0.69 0.537727
Target:  5'- cCAggaGCUcgGGCUCGuCCUCCGACCgGc -3'
miRNA:   3'- uGUaugCGG--CCGAGC-GGAGGCUGGgC- -5'
25522 3' -60.7 NC_005337.1 + 42419 0.76 0.214498
Target:  5'- -uGUGCGCCGGCUUcggcgugaGCUUCCGGgCCGa -3'
miRNA:   3'- ugUAUGCGGCCGAG--------CGGAGGCUgGGC- -5'
25522 3' -60.7 NC_005337.1 + 133184 0.74 0.27747
Target:  5'- gGCGcUGCGCCGGCUguaGCCcgcUCCGuCCCGc -3'
miRNA:   3'- -UGU-AUGCGGCCGAg--CGG---AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 29674 0.73 0.310652
Target:  5'- cGCGgugGCGCCGuauGCUCGCCgCCGACgaCCGg -3'
miRNA:   3'- -UGUa--UGCGGC---CGAGCGGaGGCUG--GGC- -5'
25522 3' -60.7 NC_005337.1 + 45058 0.7 0.471984
Target:  5'- aGCuggGCGCCGGC-CgGCCggagaUCCGugCCGa -3'
miRNA:   3'- -UGua-UGCGGCCGaG-CGG-----AGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 21790 0.69 0.499703
Target:  5'- cCGUGCuGCgGGC-CGCCUUCGACgCGc -3'
miRNA:   3'- uGUAUG-CGgCCGaGCGGAGGCUGgGC- -5'
25522 3' -60.7 NC_005337.1 + 115178 0.69 0.499703
Target:  5'- cGCGgACGCCGGCgucCGCCUCUucaACUCGc -3'
miRNA:   3'- -UGUaUGCGGCCGa--GCGGAGGc--UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 19700 0.69 0.512884
Target:  5'- gGCGUacaGCGCCGGCgccaucugcggccgCGCCUCCacgauGGCCUc -3'
miRNA:   3'- -UGUA---UGCGGCCGa-------------GCGGAGG-----CUGGGc -5'
25522 3' -60.7 NC_005337.1 + 93714 0.69 0.518577
Target:  5'- ---cGCGgCGGCUCgacgcgGCCUCCagcGACCCGc -3'
miRNA:   3'- uguaUGCgGCCGAG------CGGAGG---CUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.