miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 3' -60.7 NC_005337.1 + 121294 1.07 0.001384
Target:  5'- gACAUACGCCGGCUCGCCUCCGACCCGc -3'
miRNA:   3'- -UGUAUGCGGCCGAGCGGAGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 44223 0.69 0.537727
Target:  5'- uCAU-CGaCCGGCUgGUCUCCGugggcgggucGCCCGa -3'
miRNA:   3'- uGUAuGC-GGCCGAgCGGAGGC----------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 35670 0.68 0.556141
Target:  5'- aGC-UGCGCCaggaggaGGC-CGCCUUCGACCgGc -3'
miRNA:   3'- -UGuAUGCGG-------CCGaGCGGAGGCUGGgC- -5'
25522 3' -60.7 NC_005337.1 + 62658 0.66 0.714903
Target:  5'- gACGUugGCCGGCauggccacgUUGCCgUUGACCa- -3'
miRNA:   3'- -UGUAugCGGCCG---------AGCGGaGGCUGGgc -5'
25522 3' -60.7 NC_005337.1 + 133184 0.74 0.27747
Target:  5'- gGCGcUGCGCCGGCUguaGCCcgcUCCGuCCCGc -3'
miRNA:   3'- -UGU-AUGCGGCCGAg--CGG---AGGCuGGGC- -5'
25522 3' -60.7 NC_005337.1 + 103367 0.72 0.362031
Target:  5'- cAUcgGCGCagGGCUCGCCUgccgucgcuaCGACCCGa -3'
miRNA:   3'- -UGuaUGCGg-CCGAGCGGAg---------GCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 77416 0.71 0.419026
Target:  5'- cCAUGCGCUGGCggugcaugCGCaCgaagCCGugCCGg -3'
miRNA:   3'- uGUAUGCGGCCGa-------GCG-Ga---GGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 118783 0.7 0.445065
Target:  5'- ---gACGCCGGCggcggCGCCgUCGugCCGc -3'
miRNA:   3'- uguaUGCGGCCGa----GCGGaGGCugGGC- -5'
25522 3' -60.7 NC_005337.1 + 2656 0.7 0.453943
Target:  5'- ---gGCGCCGGC-CGCCUCC-ACgCUGa -3'
miRNA:   3'- uguaUGCGGCCGaGCGGAGGcUG-GGC- -5'
25522 3' -60.7 NC_005337.1 + 18727 0.69 0.518577
Target:  5'- uGCGgcGCGCUGGC--GCCUCUGACCgGa -3'
miRNA:   3'- -UGUa-UGCGGCCGagCGGAGGCUGGgC- -5'
25522 3' -60.7 NC_005337.1 + 50982 0.69 0.49038
Target:  5'- gGCGggGCGCCGcGCguUCGUCgUCGGCCCGg -3'
miRNA:   3'- -UGUa-UGCGGC-CG--AGCGGaGGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 115498 0.7 0.453943
Target:  5'- -gGUGCGCCGGcCUCGCgaggucgaCGACCUGg -3'
miRNA:   3'- ugUAUGCGGCC-GAGCGgag-----GCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 102039 0.79 0.121629
Target:  5'- cGCGUACGCCuGCUucccggagcaCGCCUCCGACCUc -3'
miRNA:   3'- -UGUAUGCGGcCGA----------GCGGAGGCUGGGc -5'
25522 3' -60.7 NC_005337.1 + 79993 0.69 0.499703
Target:  5'- aGCAUGuuuuuucgucgcCGCgCGGCgcuaagCGCCgcacCCGGCCCGg -3'
miRNA:   3'- -UGUAU------------GCG-GCCGa-----GCGGa---GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 133577 0.77 0.181127
Target:  5'- gGCGUGCGCgCGaGCuUCGCCUCCGcgcgcaaggGCCCGc -3'
miRNA:   3'- -UGUAUGCG-GC-CG-AGCGGAGGC---------UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 115611 0.7 0.453943
Target:  5'- gGC-UGCGCgGGUaCGCCaccgCCGACCUGg -3'
miRNA:   3'- -UGuAUGCGgCCGaGCGGa---GGCUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 127888 0.69 0.509103
Target:  5'- cGCGcgGCGCCGGCgagCGCgUgCGGgCCGa -3'
miRNA:   3'- -UGUa-UGCGGCCGa--GCGgAgGCUgGGC- -5'
25522 3' -60.7 NC_005337.1 + 57104 0.68 0.547394
Target:  5'- cGCGggugGCGCCGGCaguaccccguggUCGCCgCCaGCCUGg -3'
miRNA:   3'- -UGUa---UGCGGCCG------------AGCGGaGGcUGGGC- -5'
25522 3' -60.7 NC_005337.1 + 66034 0.76 0.190163
Target:  5'- cCAcGCGCCGGC-CGCgCUCCGgaACCCGg -3'
miRNA:   3'- uGUaUGCGGCCGaGCG-GAGGC--UGGGC- -5'
25522 3' -60.7 NC_005337.1 + 59270 0.72 0.362031
Target:  5'- cGCGUcaGCGgCGGC-CGCCUCguguacgugguCGACCCGg -3'
miRNA:   3'- -UGUA--UGCgGCCGaGCGGAG-----------GCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.