miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 79110 0.67 0.995313
Target:  5'- gCCGgaGAUGAUguacGAGA-GGUUGAUGCuGCu -3'
miRNA:   3'- gGGU--UUACUA----CUCUgCCAACUGCG-CG- -5'
25522 5' -49.3 NC_005337.1 + 59002 0.67 0.995313
Target:  5'- gCUCAAGcgGAgcucgcugGAGugGGU--GCGCGCg -3'
miRNA:   3'- -GGGUUUa-CUa-------CUCugCCAacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 38396 0.67 0.994537
Target:  5'- gCCGAG-GAgucgGAGACGuucucUGACGUGCg -3'
miRNA:   3'- gGGUUUaCUa---CUCUGCca---ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 48931 0.67 0.994537
Target:  5'- gUCCGGcaacugcggcGUGA--AGGCGGUgaugGACGUGCu -3'
miRNA:   3'- -GGGUU----------UACUacUCUGCCAa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 13622 0.67 0.994454
Target:  5'- uCCCGGGUGAaGAGcACcucgucuGGaagcagGACGCGCg -3'
miRNA:   3'- -GGGUUUACUaCUC-UG-------CCaa----CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 80241 0.67 0.99366
Target:  5'- cUCCGAcugcGUGAUaucGAUGGgcGACGUGCg -3'
miRNA:   3'- -GGGUU----UACUAcu-CUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 109357 0.68 0.990338
Target:  5'- gCCCGAggcgGUGcaguacacgGAGGCGGgc-ACGCGCg -3'
miRNA:   3'- -GGGUU----UACua-------CUCUGCCaacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 30074 0.68 0.990338
Target:  5'- cCCCGAG-GAUGGcGCGGcgcuCGCGCa -3'
miRNA:   3'- -GGGUUUaCUACUcUGCCaacuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 70758 0.68 0.988968
Target:  5'- gCCCGAGgccugcacgucGGUGAGcACGGagGACaGCGCc -3'
miRNA:   3'- -GGGUUUa----------CUACUC-UGCCaaCUG-CGCG- -5'
25522 5' -49.3 NC_005337.1 + 52224 0.69 0.983944
Target:  5'- cUCCAgcggGAUGAUGcAGACGGgcGAC-UGCu -3'
miRNA:   3'- -GGGU----UUACUAC-UCUGCCaaCUGcGCG- -5'
25522 5' -49.3 NC_005337.1 + 117707 0.69 0.979739
Target:  5'- gUCCAcagcGUGAacgUGaAGACGGUgcugcggGACGCGUg -3'
miRNA:   3'- -GGGUu---UACU---AC-UCUGCCAa------CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 131313 0.69 0.977351
Target:  5'- gCCGAGUGc-GAGGCGGa-GAcCGCGCu -3'
miRNA:   3'- gGGUUUACuaCUCUGCCaaCU-GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 87877 0.7 0.970185
Target:  5'- aCCCGGGUGAccucgcggcaggaccUGGcuGACGcGcUGGCGCGCc -3'
miRNA:   3'- -GGGUUUACU---------------ACU--CUGC-CaACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 36298 0.7 0.968954
Target:  5'- gCCAc--GGUGucGCGGaUGGCGCGCa -3'
miRNA:   3'- gGGUuuaCUACucUGCCaACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 76816 0.7 0.965716
Target:  5'- gCgCGcuUGAUGcgcAGGCGGUgGAUGCGCa -3'
miRNA:   3'- -GgGUuuACUAC---UCUGCCAaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 43389 0.7 0.96538
Target:  5'- cCCCGGGcGGUGggcaccaAGACGGUgGcCGCGCu -3'
miRNA:   3'- -GGGUUUaCUAC-------UCUGCCAaCuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 6464 0.7 0.962249
Target:  5'- cCCCAGuUGGUG--GCGGUgaccaGCGCGCg -3'
miRNA:   3'- -GGGUUuACUACucUGCCAac---UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 89526 0.71 0.958545
Target:  5'- cUCCugucuGAUGAUGAGGCGGaa---GCGCu -3'
miRNA:   3'- -GGGu----UUACUACUCUGCCaacugCGCG- -5'
25522 5' -49.3 NC_005337.1 + 44352 0.71 0.954599
Target:  5'- gCCCucuGUGAgGAGugGGgcGACGCc- -3'
miRNA:   3'- -GGGuu-UACUaCUCugCCaaCUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 68613 0.72 0.941266
Target:  5'- gCCUucgcGGUGGGGUGGUUcGGCGCGCa -3'
miRNA:   3'- -GGGuuuaCUACUCUGCCAA-CUGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.