miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 52224 0.69 0.983944
Target:  5'- cUCCAgcggGAUGAUGcAGACGGgcGAC-UGCu -3'
miRNA:   3'- -GGGU----UUACUAC-UCUGCCaaCUGcGCG- -5'
25522 5' -49.3 NC_005337.1 + 53416 0.66 0.998597
Target:  5'- aCCuGGUGAgcgugGuGACGG-UGACGCa- -3'
miRNA:   3'- gGGuUUACUa----CuCUGCCaACUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 59002 0.67 0.995313
Target:  5'- gCUCAAGcgGAgcucgcugGAGugGGU--GCGCGCg -3'
miRNA:   3'- -GGGUUUa-CUa-------CUCugCCAacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 65697 0.66 0.998597
Target:  5'- uCCCuguUGGUGcacAGccgcacGCGGUggGGCGCGCc -3'
miRNA:   3'- -GGGuuuACUAC---UC------UGCCAa-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 66929 0.66 0.998307
Target:  5'- gUCCA--UGGUGGccACGGacccgGACGCGCg -3'
miRNA:   3'- -GGGUuuACUACUc-UGCCaa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 67294 0.76 0.795623
Target:  5'- cCCCGcGU--UGAGGCGGUuguagcgguccaUGGCGCGCu -3'
miRNA:   3'- -GGGUuUAcuACUCUGCCA------------ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 68613 0.72 0.941266
Target:  5'- gCCUucgcGGUGGGGUGGUUcGGCGCGCa -3'
miRNA:   3'- -GGGuuuaCUACUCUGCCAA-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 70758 0.68 0.988968
Target:  5'- gCCCGAGgccugcacgucGGUGAGcACGGagGACaGCGCc -3'
miRNA:   3'- -GGGUUUa----------CUACUC-UGCCaaCUG-CGCG- -5'
25522 5' -49.3 NC_005337.1 + 74997 0.67 0.996597
Target:  5'- aCCAcGUacacGAGGCGGccgccgcUGACGCGCa -3'
miRNA:   3'- gGGUuUAcua-CUCUGCCa------ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 75403 0.67 0.995313
Target:  5'- gCCGcGcgGAUGcuGCGGacGGCGCGCg -3'
miRNA:   3'- gGGU-UuaCUACucUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 76816 0.7 0.965716
Target:  5'- gCgCGcuUGAUGcgcAGGCGGUgGAUGCGCa -3'
miRNA:   3'- -GgGUuuACUAC---UCUGCCAaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 77488 0.66 0.997969
Target:  5'- uCCCGGGgcGGUGcauGGCGGcgaccgGACGCGUu -3'
miRNA:   3'- -GGGUUUa-CUACu--CUGCCaa----CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 79110 0.67 0.995313
Target:  5'- gCCGgaGAUGAUguacGAGA-GGUUGAUGCuGCu -3'
miRNA:   3'- gGGU--UUACUA----CUCUgCCAACUGCG-CG- -5'
25522 5' -49.3 NC_005337.1 + 79290 0.73 0.887402
Target:  5'- cCCCGGGUacgaGAUGAaGCGGUUGuuCGCGUc -3'
miRNA:   3'- -GGGUUUA----CUACUcUGCCAACu-GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 79789 0.73 0.90116
Target:  5'- uCCCAGAUGGUGucGGACGaggaguuuauGgcGACGUGCc -3'
miRNA:   3'- -GGGUUUACUAC--UCUGC----------CaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 80241 0.67 0.99366
Target:  5'- cUCCGAcugcGUGAUaucGAUGGgcGACGUGCg -3'
miRNA:   3'- -GGGUU----UACUAcu-CUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 81025 0.67 0.996597
Target:  5'- gUCCGGGcgugGAGAUGGcgggGAUGCGCa -3'
miRNA:   3'- -GGGUUUacuaCUCUGCCaa--CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 83787 0.73 0.894405
Target:  5'- uCCCGcuUGAUGuugacGCGGUcUGAUGCGCu -3'
miRNA:   3'- -GGGUuuACUACuc---UGCCA-ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 85388 0.72 0.925629
Target:  5'- cUCCAGGUGcGUGgucuggccgccGGGCGGg-GACGCGCa -3'
miRNA:   3'- -GGGUUUAC-UAC-----------UCUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 87877 0.7 0.970185
Target:  5'- aCCCGGGUGAccucgcggcaggaccUGGcuGACGcGcUGGCGCGCc -3'
miRNA:   3'- -GGGUUUACU---------------ACU--CUGC-CaACUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.