miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 6464 0.7 0.962249
Target:  5'- cCCCAGuUGGUG--GCGGUgaccaGCGCGCg -3'
miRNA:   3'- -GGGUUuACUACucUGCCAac---UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 6613 0.72 0.921645
Target:  5'- gCCCAucugGAUGAGGCgccggcacgccgcagGGUUGAagaccgcCGCGCg -3'
miRNA:   3'- -GGGUuua-CUACUCUG---------------CCAACU-------GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 10728 0.74 0.864945
Target:  5'- gCCAuGUGGUcaGGGCGGUggGACGUGCa -3'
miRNA:   3'- gGGUuUACUAc-UCUGCCAa-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 13622 0.67 0.994454
Target:  5'- uCCCGGGUGAaGAGcACcucgucuGGaagcagGACGCGCg -3'
miRNA:   3'- -GGGUUUACUaCUC-UG-------CCaa----CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 17401 0.72 0.941266
Target:  5'- gCCAGGuUGAUGAGgaACGG---GCGCGCg -3'
miRNA:   3'- gGGUUU-ACUACUC--UGCCaacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 17541 0.66 0.997969
Target:  5'- aCCAuuaguggcAGUGGuUGAGACGGUgguaGugGUGg -3'
miRNA:   3'- gGGU--------UUACU-ACUCUGCCAa---CugCGCg -5'
25522 5' -49.3 NC_005337.1 + 17638 0.66 0.997969
Target:  5'- gCCCGucUGGUGAGGucuUUGGCGgGCg -3'
miRNA:   3'- -GGGUuuACUACUCUgccAACUGCgCG- -5'
25522 5' -49.3 NC_005337.1 + 28030 0.66 0.998597
Target:  5'- uCCCAuguuuUGGUGGuACGGUguUGAUGCa- -3'
miRNA:   3'- -GGGUuu---ACUACUcUGCCA--ACUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 29059 0.76 0.78614
Target:  5'- gCCAuAUGGUGAGugGuGUagugUGuACGCGCg -3'
miRNA:   3'- gGGUuUACUACUCugC-CA----AC-UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 30074 0.68 0.990338
Target:  5'- cCCCGAG-GAUGGcGCGGcgcuCGCGCa -3'
miRNA:   3'- -GGGUUUaCUACUcUGCCaacuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 31202 0.77 0.726447
Target:  5'- cCCCAGGUGAccAGGCGGUagacgaUGcCGCGCu -3'
miRNA:   3'- -GGGUUUACUacUCUGCCA------ACuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 34837 0.73 0.887402
Target:  5'- uCCCGcAUGAUGGGgcauauauGCGGc-GGCGCGCc -3'
miRNA:   3'- -GGGUuUACUACUC--------UGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 36298 0.7 0.968954
Target:  5'- gCCAc--GGUGucGCGGaUGGCGCGCa -3'
miRNA:   3'- gGGUuuaCUACucUGCCaACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 38396 0.67 0.994537
Target:  5'- gCCGAG-GAgucgGAGACGuucucUGACGUGCg -3'
miRNA:   3'- gGGUUUaCUa---CUCUGCca---ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 42685 0.74 0.880154
Target:  5'- gCCCGGAUGGUG-GACGGgaccgUGAU-CGCc -3'
miRNA:   3'- -GGGUUUACUACuCUGCCa----ACUGcGCG- -5'
25522 5' -49.3 NC_005337.1 + 43389 0.7 0.96538
Target:  5'- cCCCGGGcGGUGggcaccaAGACGGUgGcCGCGCu -3'
miRNA:   3'- -GGGUUUaCUAC-------UCUGCCAaCuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 44352 0.71 0.954599
Target:  5'- gCCCucuGUGAgGAGugGGgcGACGCc- -3'
miRNA:   3'- -GGGuu-UACUaCUCugCCaaCUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 48931 0.67 0.994537
Target:  5'- gUCCGGcaacugcggcGUGA--AGGCGGUgaugGACGUGCu -3'
miRNA:   3'- -GGGUU----------UACUacUCUGCCAa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 50356 0.66 0.998307
Target:  5'- cCCCAcgccgGcgGAGACGGgcccgGGCacggGCGCc -3'
miRNA:   3'- -GGGUuua--CuaCUCUGCCaa---CUG----CGCG- -5'
25522 5' -49.3 NC_005337.1 + 51698 0.66 0.998597
Target:  5'- gCCAGucUGGccUGcGACGGc-GACGCGCu -3'
miRNA:   3'- gGGUUu-ACU--ACuCUGCCaaCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.