miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 121328 1.15 0.005894
Target:  5'- aCCCAAAUGAUGAGACGGUUGACGCGCc -3'
miRNA:   3'- -GGGUUUACUACUCUGCCAACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 31202 0.77 0.726447
Target:  5'- cCCCAGGUGAccAGGCGGUagacgaUGcCGCGCu -3'
miRNA:   3'- -GGGUUUACUacUCUGCCA------ACuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 29059 0.76 0.78614
Target:  5'- gCCAuAUGGUGAGugGuGUagugUGuACGCGCg -3'
miRNA:   3'- gGGUuUACUACUCugC-CA----AC-UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 67294 0.76 0.795623
Target:  5'- cCCCGcGU--UGAGGCGGUuguagcgguccaUGGCGCGCu -3'
miRNA:   3'- -GGGUuUAcuACUCUGCCA------------ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 93123 0.75 0.804946
Target:  5'- cCCCug-----GAGACGGUcccgGACGCGCg -3'
miRNA:   3'- -GGGuuuacuaCUCUGCCAa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 10728 0.74 0.864945
Target:  5'- gCCAuGUGGUcaGGGCGGUggGACGUGCa -3'
miRNA:   3'- gGGUuUACUAc-UCUGCCAa-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 126093 0.74 0.864945
Target:  5'- gCCaAGAUGAucacUGAGuCGGUUGACGCu- -3'
miRNA:   3'- gGG-UUUACU----ACUCuGCCAACUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 124798 0.74 0.880154
Target:  5'- gCgCAGAUGGgccGGCGGUgGACGCGCc -3'
miRNA:   3'- -GgGUUUACUacuCUGCCAaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 42685 0.74 0.880154
Target:  5'- gCCCGGAUGGUG-GACGGgaccgUGAU-CGCc -3'
miRNA:   3'- -GGGUUUACUACuCUGCCa----ACUGcGCG- -5'
25522 5' -49.3 NC_005337.1 + 79290 0.73 0.887402
Target:  5'- cCCCGGGUacgaGAUGAaGCGGUUGuuCGCGUc -3'
miRNA:   3'- -GGGUUUA----CUACUcUGCCAACu-GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 34837 0.73 0.887402
Target:  5'- uCCCGcAUGAUGGGgcauauauGCGGc-GGCGCGCc -3'
miRNA:   3'- -GGGUuUACUACUC--------UGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 83787 0.73 0.894405
Target:  5'- uCCCGcuUGAUGuugacGCGGUcUGAUGCGCu -3'
miRNA:   3'- -GGGUuuACUACuc---UGCCA-ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 79789 0.73 0.90116
Target:  5'- uCCCAGAUGGUGucGGACGaggaguuuauGgcGACGUGCc -3'
miRNA:   3'- -GGGUUUACUAC--UCUGC----------CaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 121845 0.73 0.90116
Target:  5'- gCCGGAg---GAcAUGGUUGACGCGCu -3'
miRNA:   3'- gGGUUUacuaCUcUGCCAACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 6613 0.72 0.921645
Target:  5'- gCCCAucugGAUGAGGCgccggcacgccgcagGGUUGAagaccgcCGCGCg -3'
miRNA:   3'- -GGGUuua-CUACUCUG---------------CCAACU-------GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 85388 0.72 0.925629
Target:  5'- cUCCAGGUGcGUGgucuggccgccGGGCGGg-GACGCGCa -3'
miRNA:   3'- -GGGUUUAC-UAC-----------UCUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 100915 0.72 0.925629
Target:  5'- gCCCGucGUGAgcgGAGACGaGUa-GCGCGCg -3'
miRNA:   3'- -GGGUu-UACUa--CUCUGC-CAacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 68613 0.72 0.941266
Target:  5'- gCCUucgcGGUGGGGUGGUUcGGCGCGCa -3'
miRNA:   3'- -GGGuuuaCUACUCUGCCAA-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 17401 0.72 0.941266
Target:  5'- gCCAGGuUGAUGAGgaACGG---GCGCGCg -3'
miRNA:   3'- gGGUUU-ACUACUC--UGCCaacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 44352 0.71 0.954599
Target:  5'- gCCCucuGUGAgGAGugGGgcGACGCc- -3'
miRNA:   3'- -GGGuu-UACUaCUCugCCaaCUGCGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.