miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 66929 0.66 0.998307
Target:  5'- gUCCA--UGGUGGccACGGacccgGACGCGCg -3'
miRNA:   3'- -GGGUuuACUACUc-UGCCaa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 109357 0.68 0.990338
Target:  5'- gCCCGAggcgGUGcaguacacgGAGGCGGgc-ACGCGCg -3'
miRNA:   3'- -GGGUU----UACua-------CUCUGCCaacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 48931 0.67 0.994537
Target:  5'- gUCCGGcaacugcggcGUGA--AGGCGGUgaugGACGUGCu -3'
miRNA:   3'- -GGGUU----------UACUacUCUGCCAa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 99084 0.67 0.995313
Target:  5'- uUCCGGcaGGUGuGGACGGcgGACGaCGCc -3'
miRNA:   3'- -GGGUUuaCUAC-UCUGCCaaCUGC-GCG- -5'
25522 5' -49.3 NC_005337.1 + 122835 0.67 0.995997
Target:  5'- uUCCAGAUGGaGAGGuuUGGUgcugGAgagccCGCGCg -3'
miRNA:   3'- -GGGUUUACUaCUCU--GCCAa---CU-----GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 88953 0.67 0.995997
Target:  5'- aCCGc--GcgGAGGCGGagGGCGCGg -3'
miRNA:   3'- gGGUuuaCuaCUCUGCCaaCUGCGCg -5'
25522 5' -49.3 NC_005337.1 + 74997 0.67 0.996597
Target:  5'- aCCAcGUacacGAGGCGGccgccgcUGACGCGCa -3'
miRNA:   3'- gGGUuUAcua-CUCUGCCa------ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 17638 0.66 0.997969
Target:  5'- gCCCGucUGGUGAGGucuUUGGCGgGCg -3'
miRNA:   3'- -GGGUuuACUACUCUgccAACUGCgCG- -5'
25522 5' -49.3 NC_005337.1 + 77488 0.66 0.997969
Target:  5'- uCCCGGGgcGGUGcauGGCGGcgaccgGACGCGUu -3'
miRNA:   3'- -GGGUUUa-CUACu--CUGCCaa----CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 117707 0.69 0.979739
Target:  5'- gUCCAcagcGUGAacgUGaAGACGGUgcugcggGACGCGUg -3'
miRNA:   3'- -GGGUu---UACU---AC-UCUGCCAa------CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 6464 0.7 0.962249
Target:  5'- cCCCAGuUGGUG--GCGGUgaccaGCGCGCg -3'
miRNA:   3'- -GGGUUuACUACucUGCCAac---UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 44352 0.71 0.954599
Target:  5'- gCCCucuGUGAgGAGugGGgcGACGCc- -3'
miRNA:   3'- -GGGuu-UACUaCUCugCCaaCUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 124798 0.74 0.880154
Target:  5'- gCgCAGAUGGgccGGCGGUgGACGCGCc -3'
miRNA:   3'- -GgGUUUACUacuCUGCCAaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 34837 0.73 0.887402
Target:  5'- uCCCGcAUGAUGGGgcauauauGCGGc-GGCGCGCc -3'
miRNA:   3'- -GGGUuUACUACUC--------UGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 79290 0.73 0.887402
Target:  5'- cCCCGGGUacgaGAUGAaGCGGUUGuuCGCGUc -3'
miRNA:   3'- -GGGUUUA----CUACUcUGCCAACu-GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 83787 0.73 0.894405
Target:  5'- uCCCGcuUGAUGuugacGCGGUcUGAUGCGCu -3'
miRNA:   3'- -GGGUuuACUACuc---UGCCA-ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 79789 0.73 0.90116
Target:  5'- uCCCAGAUGGUGucGGACGaggaguuuauGgcGACGUGCc -3'
miRNA:   3'- -GGGUUUACUAC--UCUGC----------CaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 6613 0.72 0.921645
Target:  5'- gCCCAucugGAUGAGGCgccggcacgccgcagGGUUGAagaccgcCGCGCg -3'
miRNA:   3'- -GGGUuua-CUACUCUG---------------CCAACU-------GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 17401 0.72 0.941266
Target:  5'- gCCAGGuUGAUGAGgaACGG---GCGCGCg -3'
miRNA:   3'- gGGUUU-ACUACUC--UGCCaacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 68613 0.72 0.941266
Target:  5'- gCCUucgcGGUGGGGUGGUUcGGCGCGCa -3'
miRNA:   3'- -GGGuuuaCUACUCUGCCAA-CUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.