miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 121328 1.15 0.005894
Target:  5'- aCCCAAAUGAUGAGACGGUUGACGCGCc -3'
miRNA:   3'- -GGGUUUACUACUCUGCCAACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 70758 0.68 0.988968
Target:  5'- gCCCGAGgccugcacgucGGUGAGcACGGagGACaGCGCc -3'
miRNA:   3'- -GGGUUUa----------CUACUC-UGCCaaCUG-CGCG- -5'
25522 5' -49.3 NC_005337.1 + 80241 0.67 0.99366
Target:  5'- cUCCGAcugcGUGAUaucGAUGGgcGACGUGCg -3'
miRNA:   3'- -GGGUU----UACUAcu-CUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 65697 0.66 0.998597
Target:  5'- uCCCuguUGGUGcacAGccgcacGCGGUggGGCGCGCc -3'
miRNA:   3'- -GGGuuuACUAC---UC------UGCCAa-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 10728 0.74 0.864945
Target:  5'- gCCAuGUGGUcaGGGCGGUggGACGUGCa -3'
miRNA:   3'- gGGUuUACUAc-UCUGCCAa-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 126093 0.74 0.864945
Target:  5'- gCCaAGAUGAucacUGAGuCGGUUGACGCu- -3'
miRNA:   3'- gGG-UUUACU----ACUCuGCCAACUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 121845 0.73 0.90116
Target:  5'- gCCGGAg---GAcAUGGUUGACGCGCu -3'
miRNA:   3'- gGGUUUacuaCUcUGCCAACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 85388 0.72 0.925629
Target:  5'- cUCCAGGUGcGUGgucuggccgccGGGCGGg-GACGCGCa -3'
miRNA:   3'- -GGGUUUAC-UAC-----------UCUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 43389 0.7 0.96538
Target:  5'- cCCCGGGcGGUGggcaccaAGACGGUgGcCGCGCu -3'
miRNA:   3'- -GGGUUUaCUAC-------UCUGCCAaCuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 52224 0.69 0.983944
Target:  5'- cUCCAgcggGAUGAUGcAGACGGgcGAC-UGCu -3'
miRNA:   3'- -GGGU----UUACUAC-UCUGCCaaCUGcGCG- -5'
25522 5' -49.3 NC_005337.1 + 36298 0.7 0.968954
Target:  5'- gCCAc--GGUGucGCGGaUGGCGCGCa -3'
miRNA:   3'- gGGUuuaCUACucUGCCaACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 89526 0.71 0.958545
Target:  5'- cUCCugucuGAUGAUGAGGCGGaa---GCGCu -3'
miRNA:   3'- -GGGu----UUACUACUCUGCCaacugCGCG- -5'
25522 5' -49.3 NC_005337.1 + 29059 0.76 0.78614
Target:  5'- gCCAuAUGGUGAGugGuGUagugUGuACGCGCg -3'
miRNA:   3'- gGGUuUACUACUCugC-CA----AC-UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 87877 0.7 0.970185
Target:  5'- aCCCGGGUGAccucgcggcaggaccUGGcuGACGcGcUGGCGCGCc -3'
miRNA:   3'- -GGGUUUACU---------------ACU--CUGC-CaACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 67294 0.76 0.795623
Target:  5'- cCCCGcGU--UGAGGCGGUuguagcgguccaUGGCGCGCu -3'
miRNA:   3'- -GGGUuUAcuACUCUGCCA------------ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 100915 0.72 0.925629
Target:  5'- gCCCGucGUGAgcgGAGACGaGUa-GCGCGCg -3'
miRNA:   3'- -GGGUu-UACUa--CUCUGC-CAacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 131313 0.69 0.977351
Target:  5'- gCCGAGUGc-GAGGCGGa-GAcCGCGCu -3'
miRNA:   3'- gGGUUUACuaCUCUGCCaaCU-GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 30074 0.68 0.990338
Target:  5'- cCCCGAG-GAUGGcGCGGcgcuCGCGCa -3'
miRNA:   3'- -GGGUUUaCUACUcUGCCaacuGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 93123 0.75 0.804946
Target:  5'- cCCCug-----GAGACGGUcccgGACGCGCg -3'
miRNA:   3'- -GGGuuuacuaCUCUGCCAa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 42685 0.74 0.880154
Target:  5'- gCCCGGAUGGUG-GACGGgaccgUGAU-CGCc -3'
miRNA:   3'- -GGGUUUACUACuCUGCCa----ACUGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.