Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25522 | 5' | -49.3 | NC_005337.1 | + | 132757 | 0.66 | 0.997575 |
Target: 5'- aCgAAGUGgcG-GACGcGcUGGCGCGCg -3' miRNA: 3'- gGgUUUACuaCuCUGC-CaACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 131313 | 0.69 | 0.977351 |
Target: 5'- gCCGAGUGc-GAGGCGGa-GAcCGCGCu -3' miRNA: 3'- gGGUUUACuaCUCUGCCaaCU-GCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 126093 | 0.74 | 0.864945 |
Target: 5'- gCCaAGAUGAucacUGAGuCGGUUGACGCu- -3' miRNA: 3'- gGG-UUUACU----ACUCuGCCAACUGCGcg -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 124798 | 0.74 | 0.880154 |
Target: 5'- gCgCAGAUGGgccGGCGGUgGACGCGCc -3' miRNA: 3'- -GgGUUUACUacuCUGCCAaCUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 123843 | 0.66 | 0.998597 |
Target: 5'- uCCCGGcguucgcggcGUGcAUG-GACGGcgGGCGCGg -3' miRNA: 3'- -GGGUU----------UAC-UACuCUGCCaaCUGCGCg -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 122835 | 0.67 | 0.995997 |
Target: 5'- uUCCAGAUGGaGAGGuuUGGUgcugGAgagccCGCGCg -3' miRNA: 3'- -GGGUUUACUaCUCU--GCCAa---CU-----GCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 122779 | 0.66 | 0.99712 |
Target: 5'- gCCgCGGAUcAUG-GACGcGUUGcuGCGCGCg -3' miRNA: 3'- -GG-GUUUAcUACuCUGC-CAAC--UGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 121845 | 0.73 | 0.90116 |
Target: 5'- gCCGGAg---GAcAUGGUUGACGCGCu -3' miRNA: 3'- gGGUUUacuaCUcUGCCAACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 121328 | 1.15 | 0.005894 |
Target: 5'- aCCCAAAUGAUGAGACGGUUGACGCGCc -3' miRNA: 3'- -GGGUUUACUACUCUGCCAACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 117707 | 0.69 | 0.979739 |
Target: 5'- gUCCAcagcGUGAacgUGaAGACGGUgcugcggGACGCGUg -3' miRNA: 3'- -GGGUu---UACU---AC-UCUGCCAa------CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 109771 | 0.66 | 0.99712 |
Target: 5'- gUCCGc--GGUGGGACGaccucgcgugcGUacaUGACGCGCa -3' miRNA: 3'- -GGGUuuaCUACUCUGC-----------CA---ACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 109357 | 0.68 | 0.990338 |
Target: 5'- gCCCGAggcgGUGcaguacacgGAGGCGGgc-ACGCGCg -3' miRNA: 3'- -GGGUU----UACua-------CUCUGCCaacUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 108531 | 0.66 | 0.99712 |
Target: 5'- gCUGGAcGgcGcGACGGUgcggGGCGCGCg -3' miRNA: 3'- gGGUUUaCuaCuCUGCCAa---CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 100915 | 0.72 | 0.925629 |
Target: 5'- gCCCGucGUGAgcgGAGACGaGUa-GCGCGCg -3' miRNA: 3'- -GGGUu-UACUa--CUCUGC-CAacUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 99084 | 0.67 | 0.995313 |
Target: 5'- uUCCGGcaGGUGuGGACGGcgGACGaCGCc -3' miRNA: 3'- -GGGUUuaCUAC-UCUGCCaaCUGC-GCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 93123 | 0.75 | 0.804946 |
Target: 5'- cCCCug-----GAGACGGUcccgGACGCGCg -3' miRNA: 3'- -GGGuuuacuaCUCUGCCAa---CUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 89526 | 0.71 | 0.958545 |
Target: 5'- cUCCugucuGAUGAUGAGGCGGaa---GCGCu -3' miRNA: 3'- -GGGu----UUACUACUCUGCCaacugCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 88953 | 0.67 | 0.995997 |
Target: 5'- aCCGc--GcgGAGGCGGagGGCGCGg -3' miRNA: 3'- gGGUuuaCuaCUCUGCCaaCUGCGCg -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 87877 | 0.7 | 0.970185 |
Target: 5'- aCCCGGGUGAccucgcggcaggaccUGGcuGACGcGcUGGCGCGCc -3' miRNA: 3'- -GGGUUUACU---------------ACU--CUGC-CaACUGCGCG- -5' |
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25522 | 5' | -49.3 | NC_005337.1 | + | 85388 | 0.72 | 0.925629 |
Target: 5'- cUCCAGGUGcGUGgucuggccgccGGGCGGg-GACGCGCa -3' miRNA: 3'- -GGGUUUAC-UAC-----------UCUGCCaaCUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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