miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 83980 0.67 0.850058
Target:  5'- cGGcgCGgGCGGGCACGucugggccugcacggGGCacacuggcgcuucUGCGGCg -3'
miRNA:   3'- aCCuaGCgCGCCUGUGC---------------UCG-------------AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 4747 0.67 0.847666
Target:  5'- cGGAcgcUCGCGcCGcGCGCGAGCaGCG-Cg -3'
miRNA:   3'- aCCU---AGCGC-GCcUGUGCUCGaUGCuG- -5'
25525 3' -56.3 NC_005337.1 + 126137 0.67 0.847666
Target:  5'- gGGAUCG-GUGGAUGUGGGCgGCGAg -3'
miRNA:   3'- aCCUAGCgCGCCUGUGCUCGaUGCUg -5'
25525 3' -56.3 NC_005337.1 + 12060 0.67 0.847666
Target:  5'- cGGcgUGCGCGccGACACGuccGCgcccGCGGCg -3'
miRNA:   3'- aCCuaGCGCGC--CUGUGCu--CGa---UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 97117 0.67 0.847666
Target:  5'- gUGGcgcUCG-GCGGugGCGgAGCUGCG-Cg -3'
miRNA:   3'- -ACCu--AGCgCGCCugUGC-UCGAUGCuG- -5'
25525 3' -56.3 NC_005337.1 + 38303 0.67 0.847666
Target:  5'- gUGGAgggGCGCGcGCGuCGAGCgcaACGACc -3'
miRNA:   3'- -ACCUag-CGCGCcUGU-GCUCGa--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 133132 0.67 0.847666
Target:  5'- cUGuGAUCccCGCGGagcuggucgcGCGCGuGCUGCGGCu -3'
miRNA:   3'- -AC-CUAGc-GCGCC----------UGUGCuCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 60898 0.67 0.847666
Target:  5'- cGGGcgugUGUGCGGGCACGgccacggucgGGCacGCGACg -3'
miRNA:   3'- aCCUa---GCGCGCCUGUGC----------UCGa-UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 12276 0.67 0.847666
Target:  5'- cGGGUCGCaccccGCGcGCAgGAGCUcgcgcACGAUg -3'
miRNA:   3'- aCCUAGCG-----CGCcUGUgCUCGA-----UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 80039 0.67 0.847666
Target:  5'- cGGA-CGCGcCGGACGagGAGaucuacgccuuCUGCGACg -3'
miRNA:   3'- aCCUaGCGC-GCCUGUg-CUC-----------GAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 19320 0.67 0.847666
Target:  5'- cGGAgCGCGUGcACACGAGgaUACGGg -3'
miRNA:   3'- aCCUaGCGCGCcUGUGCUCg-AUGCUg -5'
25525 3' -56.3 NC_005337.1 + 2065 0.67 0.839567
Target:  5'- aUGGAggcgaGCGUGucCGCGAGCgcgcuCGACg -3'
miRNA:   3'- -ACCUag---CGCGCcuGUGCUCGau---GCUG- -5'
25525 3' -56.3 NC_005337.1 + 130768 0.67 0.839567
Target:  5'- gUGGAcuUCGCGCaGACcUGGGCgccgccggUGCGGCu -3'
miRNA:   3'- -ACCU--AGCGCGcCUGuGCUCG--------AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 127881 0.67 0.839567
Target:  5'- cUGGuggCGCGCGGcGCcgGCGAGCgcgUGCGGg -3'
miRNA:   3'- -ACCua-GCGCGCC-UG--UGCUCG---AUGCUg -5'
25525 3' -56.3 NC_005337.1 + 80182 0.67 0.839567
Target:  5'- cGG--CGCGCGGACGCGcuccuGCcGCGGg -3'
miRNA:   3'- aCCuaGCGCGCCUGUGCu----CGaUGCUg -5'
25525 3' -56.3 NC_005337.1 + 86673 0.67 0.839567
Target:  5'- cGGccgCGCGCGcGGCGuCGcccacgcccagcGGCUGCGGCu -3'
miRNA:   3'- aCCua-GCGCGC-CUGU-GC------------UCGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 69916 0.67 0.839567
Target:  5'- -uGcgCGCGCuGGACACG-GCUguguaccgccGCGGCg -3'
miRNA:   3'- acCuaGCGCG-CCUGUGCuCGA----------UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 89760 0.67 0.831278
Target:  5'- aGGAgcucCGcCGCGaGCGCGAGUUGCG-Cg -3'
miRNA:   3'- aCCUa---GC-GCGCcUGUGCUCGAUGCuG- -5'
25525 3' -56.3 NC_005337.1 + 35153 0.67 0.831278
Target:  5'- aGGAUCGCGuCGcuGGCG-GAGUggucgGCGACg -3'
miRNA:   3'- aCCUAGCGC-GC--CUGUgCUCGa----UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 126934 0.67 0.831278
Target:  5'- cUGGAggcggGCGCGGACGUGAacGCgcGCGACg -3'
miRNA:   3'- -ACCUag---CGCGCCUGUGCU--CGa-UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.