miRNA display CGI


Results 41 - 60 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 42404 0.67 0.603041
Target:  5'- gGCGCGcGGCC-UCgCUGUGCGccGGCUUc -3'
miRNA:   3'- -CGCGCuCCGGuAG-GACGCGUu-CCGGA- -5'
25526 5' -60.5 NC_005337.1 + 18322 0.67 0.603041
Target:  5'- aGCGCGuccauGGCCAUCUggugGUccgaGCAcGGGCCc -3'
miRNA:   3'- -CGCGCu----CCGGUAGGa---CG----CGU-UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 36271 0.67 0.592984
Target:  5'- aGCGCGAccaGCCG--CUGCGCGAacgcGGCCa -3'
miRNA:   3'- -CGCGCUc--CGGUagGACGCGUU----CCGGa -5'
25526 5' -60.5 NC_005337.1 + 89156 0.67 0.592984
Target:  5'- gGCGUGAGGCgAgccCCgugugGCGCcGAGGCg- -3'
miRNA:   3'- -CGCGCUCCGgUa--GGa----CGCG-UUCCGga -5'
25526 5' -60.5 NC_005337.1 + 9975 0.67 0.592984
Target:  5'- cGCGaCGAGGCCgcGUCCUcgGCcacgGCAGGGUUc -3'
miRNA:   3'- -CGC-GCUCCGG--UAGGA--CG----CGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 43329 0.67 0.592984
Target:  5'- uGCuCGGGGCUcgCCgacGCGCu-GGCCg -3'
miRNA:   3'- -CGcGCUCCGGuaGGa--CGCGuuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 130514 0.67 0.592984
Target:  5'- cGUGgGAGGUCAuggaguUCCUggugcGCGCGGGcGCCa -3'
miRNA:   3'- -CGCgCUCCGGU------AGGA-----CGCGUUC-CGGa -5'
25526 5' -60.5 NC_005337.1 + 89367 0.67 0.592984
Target:  5'- gGCGCcguuGGCCA-CCUggaaaaGCGCcAGGCCg -3'
miRNA:   3'- -CGCGcu--CCGGUaGGA------CGCGuUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 92898 0.67 0.582956
Target:  5'- cGCGCGGuuGCCGgcgUCgGCgGCAAGGCCg -3'
miRNA:   3'- -CGCGCUc-CGGUa--GGaCG-CGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 47979 0.67 0.582956
Target:  5'- gGCGCGgacgcguccAGGCCG-CaCUGCGU--GGCCUg -3'
miRNA:   3'- -CGCGC---------UCCGGUaG-GACGCGuuCCGGA- -5'
25526 5' -60.5 NC_005337.1 + 41521 0.67 0.582956
Target:  5'- cCGCGcGGCCAUCCgcuCGCGGaugucggucgcGGCCa -3'
miRNA:   3'- cGCGCuCCGGUAGGac-GCGUU-----------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 101507 0.67 0.572961
Target:  5'- uGCGCGAGcGC--UCC-GCGCGgcuggAGGCCg -3'
miRNA:   3'- -CGCGCUC-CGguAGGaCGCGU-----UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 58861 0.67 0.572961
Target:  5'- cGCGCGcucgcGcGCCGUCC-GCGCAuccgcgcGGCCa -3'
miRNA:   3'- -CGCGCu----C-CGGUAGGaCGCGUu------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 22642 0.67 0.572961
Target:  5'- cCGCGAGGCC-UUCgGCGCGGacgcgcGGCUg -3'
miRNA:   3'- cGCGCUCCGGuAGGaCGCGUU------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 99296 0.68 0.563008
Target:  5'- gGCGCGGcgcGGCguUCCgcaGCGCcGGGUCg -3'
miRNA:   3'- -CGCGCU---CCGguAGGa--CGCGuUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 12046 0.68 0.563008
Target:  5'- gGCGUGcGGUCGUCCgGCGUgcGcGCCg -3'
miRNA:   3'- -CGCGCuCCGGUAGGaCGCGuuC-CGGa -5'
25526 5' -60.5 NC_005337.1 + 74152 0.68 0.563008
Target:  5'- gGCaGCGAGgucaccGCCGUgCUGCGgGAGGCg- -3'
miRNA:   3'- -CG-CGCUC------CGGUAgGACGCgUUCCGga -5'
25526 5' -60.5 NC_005337.1 + 30261 0.68 0.563008
Target:  5'- gGCGCGggcAGGCgGUCCacgGCGCGcAGGUg- -3'
miRNA:   3'- -CGCGC---UCCGgUAGGa--CGCGU-UCCGga -5'
25526 5' -60.5 NC_005337.1 + 126218 0.68 0.553102
Target:  5'- cGCGCGAGugcgugauggaGCUGgcCCUcCGCAAGGCCg -3'
miRNA:   3'- -CGCGCUC-----------CGGUa-GGAcGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 98988 0.68 0.553102
Target:  5'- -aGCGGGGCCGagguggagCCgccccccgaggUGCGCGcGGCCUg -3'
miRNA:   3'- cgCGCUCCGGUa-------GG-----------ACGCGUuCCGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.