miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 118497 0.7 0.837497
Target:  5'- cGGCggUGaCCGUGcgggugaccggcgucGugUCGGcGGAUGCCa -3'
miRNA:   3'- -CCGaaAC-GGUAC---------------CugAGCC-UCUACGG- -5'
25527 5' -53 NC_005337.1 + 57861 0.7 0.825492
Target:  5'- aGGCg--GCCAggGGACaccugugCGGAGcAUGCUg -3'
miRNA:   3'- -CCGaaaCGGUa-CCUGa------GCCUC-UACGG- -5'
25527 5' -53 NC_005337.1 + 68559 0.72 0.750662
Target:  5'- cGCUUUcGCCAUGG-CgCGGAGcucgGCCa -3'
miRNA:   3'- cCGAAA-CGGUACCuGaGCCUCua--CGG- -5'
25527 5' -53 NC_005337.1 + 107162 0.72 0.74071
Target:  5'- cGCgugGCCAaGcGGCUgcUGGAGAUGCCg -3'
miRNA:   3'- cCGaaaCGGUaC-CUGA--GCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 10755 0.74 0.616298
Target:  5'- gGGC--UGC--UGGACUCGGGGAUGUa -3'
miRNA:   3'- -CCGaaACGguACCUGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 80519 0.75 0.595324
Target:  5'- gGGCacgccgagGCCcgGGGCgCGGAGAUGUCc -3'
miRNA:   3'- -CCGaaa-----CGGuaCCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 123569 0.75 0.584875
Target:  5'- -----gGCCGUGGACgCGGAG-UGCCg -3'
miRNA:   3'- ccgaaaCGGUACCUGaGCCUCuACGG- -5'
25527 5' -53 NC_005337.1 + 127655 0.75 0.553774
Target:  5'- -----cGCCGUGGACgUGGAGGUGCUc -3'
miRNA:   3'- ccgaaaCGGUACCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 35770 0.76 0.493262
Target:  5'- cGGCcUUGCCGcGGaACUCGGGGAcGUCg -3'
miRNA:   3'- -CCGaAACGGUaCC-UGAGCCUCUaCGG- -5'
25527 5' -53 NC_005337.1 + 98068 0.78 0.399967
Target:  5'- cGCUcaUGcCCGUGGuCUCGGAGAUGCa -3'
miRNA:   3'- cCGAa-AC-GGUACCuGAGCCUCUACGg -5'
25527 5' -53 NC_005337.1 + 119229 1.15 0.001937
Target:  5'- uGGCUUUGCCAUGGACUCGGAGAUGCCg -3'
miRNA:   3'- -CCGAAACGGUACCUGAGCCUCUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.