miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 5' -54.2 NC_005337.1 + 118954 1.1 0.003519
Target:  5'- cGUCGCGCGAUAUUCCACGGGUACGCGg -3'
miRNA:   3'- -CAGCGCGCUAUAAGGUGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 24709 0.81 0.247337
Target:  5'- aUCGUgcaccccGCGGaGUUCCGCGGGUACGCGc -3'
miRNA:   3'- cAGCG-------CGCUaUAAGGUGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 110347 0.81 0.254034
Target:  5'- cGUCGCGCGcgccugCCGCGGGcGCGCGg -3'
miRNA:   3'- -CAGCGCGCuauaa-GGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 128769 0.79 0.321844
Target:  5'- -gCGCGCGAaccugGUagCACGGGUGCGCGc -3'
miRNA:   3'- caGCGCGCUa----UAagGUGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41082 0.77 0.411024
Target:  5'- gGUCGUGCGAca-UCCACGGGaaguugaggUACGCGu -3'
miRNA:   3'- -CAGCGCGCUauaAGGUGCCC---------AUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 104289 0.76 0.475176
Target:  5'- uUCGCGCGGgcggUCCGCGaGG-GCGCGg -3'
miRNA:   3'- cAGCGCGCUaua-AGGUGC-CCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 6391 0.76 0.494413
Target:  5'- -gCGuCGUGAUcgUCCcCGGGUGCGUGg -3'
miRNA:   3'- caGC-GCGCUAuaAGGuGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 709 0.75 0.524905
Target:  5'- cUCGCGCGcacgcccgcggCCGCgGGGUACGCGg -3'
miRNA:   3'- cAGCGCGCuauaa------GGUG-CCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 709 0.75 0.524905
Target:  5'- cUCGCGCGcacgcccgcggCCGCgGGGUACGCGg -3'
miRNA:   3'- cAGCGCGCuauaa------GGUG-CCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 1138 0.75 0.543943
Target:  5'- -gCGCGCGAccagcUCCGCGGGgaGCGCGc -3'
miRNA:   3'- caGCGCGCUaua--AGGUGCCCa-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 75185 0.74 0.56422
Target:  5'- cUCGCGCGcg--UCCGCGGGc-CGCGa -3'
miRNA:   3'- cAGCGCGCuauaAGGUGCCCauGCGC- -5'
25528 5' -54.2 NC_005337.1 + 133708 0.73 0.615641
Target:  5'- -cCGCGCGg----CCGCGGcGUACGCGc -3'
miRNA:   3'- caGCGCGCuauaaGGUGCC-CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 133708 0.73 0.615641
Target:  5'- -cCGCGCGg----CCGCGGcGUACGCGc -3'
miRNA:   3'- caGCGCGCuauaaGGUGCC-CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 34149 0.71 0.728364
Target:  5'- -aCGCGgGGUGcaacaggUCCACGGGgaUGCGCa -3'
miRNA:   3'- caGCGCgCUAUa------AGGUGCCC--AUGCGc -5'
25528 5' -54.2 NC_005337.1 + 17048 0.71 0.738288
Target:  5'- -cCGCGCGGUcugcacGUUCCGCuGGaUGCGCa -3'
miRNA:   3'- caGCGCGCUA------UAAGGUGcCC-AUGCGc -5'
25528 5' -54.2 NC_005337.1 + 74560 0.71 0.748116
Target:  5'- -gCGCGUGAUGcuggCCGCGcGGcACGCGg -3'
miRNA:   3'- caGCGCGCUAUaa--GGUGC-CCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 60795 0.71 0.767451
Target:  5'- -cCGCGaCGAgcuugggGUccUCCGCGGGcACGCGg -3'
miRNA:   3'- caGCGC-GCUa------UA--AGGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 124409 0.71 0.771261
Target:  5'- gGUCuGCGCGAgauggUCCugggcaacgccgcgcGCGGGUGCGgGg -3'
miRNA:   3'- -CAG-CGCGCUaua--AGG---------------UGCCCAUGCgC- -5'
25528 5' -54.2 NC_005337.1 + 131375 0.7 0.786293
Target:  5'- -gCGCGCGGUAcgucuucgaCCGCGGGgcCGUGa -3'
miRNA:   3'- caGCGCGCUAUaa-------GGUGCCCauGCGC- -5'
25528 5' -54.2 NC_005337.1 + 103574 0.7 0.795505
Target:  5'- -cCG-GCGGaGUUCCgcgACGGGUACGUGg -3'
miRNA:   3'- caGCgCGCUaUAAGG---UGCCCAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.