miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 5' -54.2 NC_005337.1 + 10100 0.68 0.891953
Target:  5'- -gCGgGCGAgg-UCCACGaaGGUcACGCGg -3'
miRNA:   3'- caGCgCGCUauaAGGUGC--CCA-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 567 0.69 0.830757
Target:  5'- -cCGCGCGuacg-CCGCGGccGCGCGg -3'
miRNA:   3'- caGCGCGCuauaaGGUGCCcaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 6897 0.69 0.839128
Target:  5'- uGUCGCGCGcg----CGCGGGUcCGCGc -3'
miRNA:   3'- -CAGCGCGCuauaagGUGCCCAuGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41396 0.69 0.839128
Target:  5'- -gCGCGCGGgcagAUgacguccggcgUCCGCGGGaGCGUGc -3'
miRNA:   3'- caGCGCGCUa---UA-----------AGGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 48298 0.69 0.839128
Target:  5'- gGUCGCGCc----UCCGCaugcGGUGCGCGg -3'
miRNA:   3'- -CAGCGCGcuauaAGGUGc---CCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 103282 0.69 0.846497
Target:  5'- cGUCGCGCugg--UCCGCGaccgcaugaacgaGGUGCGCa -3'
miRNA:   3'- -CAGCGCGcuauaAGGUGC-------------CCAUGCGc -5'
25528 5' -54.2 NC_005337.1 + 74945 0.68 0.869868
Target:  5'- -cCGCGCGG-AUgcggugcuggggcUCCGCGGcUACGCGa -3'
miRNA:   3'- caGCGCGCUaUA-------------AGGUGCCcAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 28249 0.68 0.877953
Target:  5'- cGUCGCGCGGca--CCACGcgcacGUGCGUGg -3'
miRNA:   3'- -CAGCGCGCUauaaGGUGCc----CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 73551 0.68 0.877953
Target:  5'- -cCGCGCGGUcgUCgACGGGcacuucuuCGUGa -3'
miRNA:   3'- caGCGCGCUAuaAGgUGCCCau------GCGC- -5'
25528 5' -54.2 NC_005337.1 + 74625 0.69 0.830757
Target:  5'- -aCGaCGUGAUGUUCCccgGCGGG-GCGCc -3'
miRNA:   3'- caGC-GCGCUAUAAGG---UGCCCaUGCGc -5'
25528 5' -54.2 NC_005337.1 + 103574 0.7 0.795505
Target:  5'- -cCG-GCGGaGUUCCgcgACGGGUACGUGg -3'
miRNA:   3'- caGCgCGCUaUAAGG---UGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 131375 0.7 0.786293
Target:  5'- -gCGCGCGGUAcgucuucgaCCGCGGGgcCGUGa -3'
miRNA:   3'- caGCGCGCUAUaa-------GGUGCCCauGCGC- -5'
25528 5' -54.2 NC_005337.1 + 128769 0.79 0.321844
Target:  5'- -gCGCGCGAaccugGUagCACGGGUGCGCGc -3'
miRNA:   3'- caGCGCGCUa----UAagGUGCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41082 0.77 0.411024
Target:  5'- gGUCGUGCGAca-UCCACGGGaaguugaggUACGCGu -3'
miRNA:   3'- -CAGCGCGCUauaAGGUGCCC---------AUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 709 0.75 0.524905
Target:  5'- cUCGCGCGcacgcccgcggCCGCgGGGUACGCGg -3'
miRNA:   3'- cAGCGCGCuauaa------GGUG-CCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 1138 0.75 0.543943
Target:  5'- -gCGCGCGAccagcUCCGCGGGgaGCGCGc -3'
miRNA:   3'- caGCGCGCUaua--AGGUGCCCa-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 75185 0.74 0.56422
Target:  5'- cUCGCGCGcg--UCCGCGGGc-CGCGa -3'
miRNA:   3'- cAGCGCGCuauaAGGUGCCCauGCGC- -5'
25528 5' -54.2 NC_005337.1 + 133708 0.73 0.615641
Target:  5'- -cCGCGCGg----CCGCGGcGUACGCGc -3'
miRNA:   3'- caGCGCGCuauaaGGUGCC-CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 34149 0.71 0.728364
Target:  5'- -aCGCGgGGUGcaacaggUCCACGGGgaUGCGCa -3'
miRNA:   3'- caGCGCgCUAUa------AGGUGCCC--AUGCGc -5'
25528 5' -54.2 NC_005337.1 + 74560 0.71 0.748116
Target:  5'- -gCGCGUGAUGcuggCCGCGcGGcACGCGg -3'
miRNA:   3'- caGCGCGCUAUaa--GGUGC-CCaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.