miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 5' -57.4 NC_005337.1 + 38284 0.67 0.822827
Target:  5'- uCC-CGCuCG-UCAAGCacCGGUGGAgGGg -3'
miRNA:   3'- -GGaGCG-GCaAGUUCG--GCCACCUgCCg -5'
25529 5' -57.4 NC_005337.1 + 57252 0.67 0.822827
Target:  5'- aCCggCGCUgGUUCGGGCaCGGggccgcgcgGGGcCGGCg -3'
miRNA:   3'- -GGa-GCGG-CAAGUUCG-GCCa--------CCU-GCCG- -5'
25529 5' -57.4 NC_005337.1 + 90982 0.67 0.817765
Target:  5'- gCCUCuuUGUUCAguaugcgagguuaccAGCCGGaUGcuGGCGGCg -3'
miRNA:   3'- -GGAGcgGCAAGU---------------UCGGCC-AC--CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 24875 0.67 0.814357
Target:  5'- --aCGCCGU----GUCuGUGGACGGCa -3'
miRNA:   3'- ggaGCGGCAaguuCGGcCACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 69684 0.67 0.814357
Target:  5'- aCCaCGCUGUUCAcgaAGUcgucgagacuguCGGUGG-CGGCc -3'
miRNA:   3'- -GGaGCGGCAAGU---UCG------------GCCACCuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 76802 0.67 0.814357
Target:  5'- aCCgCGCCGUUCAcGCCcugcaucucGGAgGGCa -3'
miRNA:   3'- -GGaGCGGCAAGUuCGGcca------CCUgCCG- -5'
25529 5' -57.4 NC_005337.1 + 42412 0.67 0.814357
Target:  5'- gCCUCGCUGUgc--GCCGGcuu-CGGCg -3'
miRNA:   3'- -GGAGCGGCAaguuCGGCCaccuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 24610 0.67 0.809197
Target:  5'- gCCUUcgGCgCGggCAcggaggugacggaaaAGCUGGUGGACGcGCu -3'
miRNA:   3'- -GGAG--CG-GCaaGU---------------UCGGCCACCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 51153 0.67 0.805726
Target:  5'- aCUCGUCGUaCAAGgaGGUGGGguccaaccUGGCc -3'
miRNA:   3'- gGAGCGGCAaGUUCggCCACCU--------GCCG- -5'
25529 5' -57.4 NC_005337.1 + 1874 0.67 0.805726
Target:  5'- uCCUCGaaGaucgCGGGCCGG-GGcCGGUa -3'
miRNA:   3'- -GGAGCggCaa--GUUCGGCCaCCuGCCG- -5'
25529 5' -57.4 NC_005337.1 + 100997 0.67 0.805726
Target:  5'- gCUCGUCGccacgcucgCGGGCCucUGGAUGGCg -3'
miRNA:   3'- gGAGCGGCaa-------GUUCGGccACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 45719 0.67 0.805726
Target:  5'- aCCgCaCCGagCGGGCUGGUG-ACGGCg -3'
miRNA:   3'- -GGaGcGGCaaGUUCGGCCACcUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 93772 0.67 0.804855
Target:  5'- aCCUCGUC-UUCGAucGCCGGacgcgcuacgacgUGGucGCGGCu -3'
miRNA:   3'- -GGAGCGGcAAGUU--CGGCC-------------ACC--UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 69114 0.67 0.796943
Target:  5'- aCCUCGUcugCGggCGAGCCGcGguccacGGCGGCc -3'
miRNA:   3'- -GGAGCG---GCaaGUUCGGC-Cac----CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 65648 0.67 0.796943
Target:  5'- cCCUcCGCCacgcuggaGUUCGAGgUGGUGcccaGCGGCg -3'
miRNA:   3'- -GGA-GCGG--------CAAGUUCgGCCACc---UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 7397 0.67 0.796943
Target:  5'- uCCUCGCCa--CGAGCacgcagaGGUGcaGCGGCg -3'
miRNA:   3'- -GGAGCGGcaaGUUCGg------CCACc-UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 95257 0.67 0.788016
Target:  5'- gCCggaUGgCGUUCAgggucAGCCGGUGGGUGGa -3'
miRNA:   3'- -GGa--GCgGCAAGU-----UCGGCCACCUGCCg -5'
25529 5' -57.4 NC_005337.1 + 99575 0.68 0.782595
Target:  5'- aCCaUGCCGcgCGAgugcacgcugaccguGCUGGgccUGGACGGCg -3'
miRNA:   3'- -GGaGCGGCaaGUU---------------CGGCC---ACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 66627 0.68 0.778041
Target:  5'- --aCGCCuUUCGGGCgggCGGUGGgagugguGCGGCg -3'
miRNA:   3'- ggaGCGGcAAGUUCG---GCCACC-------UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 130951 0.68 0.769765
Target:  5'- uCCUggaCGCCGgcguGGCC-GUGGACGuGCg -3'
miRNA:   3'- -GGA---GCGGCaaguUCGGcCACCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.