miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25530 5' -57 NC_005337.1 + 118573 1.04 0.00423
Target:  5'- gCACGACGUCCGGCACGUCGUGCUGUUc -3'
miRNA:   3'- -GUGCUGCAGGCCGUGCAGCACGACAA- -5'
25530 5' -57 NC_005337.1 + 80086 0.79 0.219824
Target:  5'- gACGACGUCCGGUGCG-CGUGcCUGa- -3'
miRNA:   3'- gUGCUGCAGGCCGUGCaGCAC-GACaa -5'
25530 5' -57 NC_005337.1 + 114728 0.78 0.254299
Target:  5'- uUACGACGUCCGGCGCGU---GCUGg- -3'
miRNA:   3'- -GUGCUGCAGGCCGUGCAgcaCGACaa -5'
25530 5' -57 NC_005337.1 + 124706 0.77 0.286319
Target:  5'- gACGACGaggaccagcUCCGGUucaGCGUCGUGCUGa- -3'
miRNA:   3'- gUGCUGC---------AGGCCG---UGCAGCACGACaa -5'
25530 5' -57 NC_005337.1 + 15704 0.76 0.321432
Target:  5'- gCACGACGUgCCGG-ACGUCGUGCg--- -3'
miRNA:   3'- -GUGCUGCA-GGCCgUGCAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 68390 0.73 0.445167
Target:  5'- uGCGACGUCCGcccuGCGCG-CGUGCgugGUa -3'
miRNA:   3'- gUGCUGCAGGC----CGUGCaGCACGa--CAa -5'
25530 5' -57 NC_005337.1 + 16758 0.72 0.482414
Target:  5'- uCACGGCGcgCCGGCugAUGUCGUGCa--- -3'
miRNA:   3'- -GUGCUGCa-GGCCG--UGCAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 66106 0.72 0.482414
Target:  5'- uGCGGCGUCUGcGCGCG-CGUGgaGUUc -3'
miRNA:   3'- gUGCUGCAGGC-CGUGCaGCACgaCAA- -5'
25530 5' -57 NC_005337.1 + 78552 0.72 0.511309
Target:  5'- aCACgGGCGcgCCGuGCGCGUCGUGCUu-- -3'
miRNA:   3'- -GUG-CUGCa-GGC-CGUGCAGCACGAcaa -5'
25530 5' -57 NC_005337.1 + 88028 0.72 0.511309
Target:  5'- gCAgGAUGUgCCGGCGCacgugcacgggGUCGUGCUGg- -3'
miRNA:   3'- -GUgCUGCA-GGCCGUG-----------CAGCACGACaa -5'
25530 5' -57 NC_005337.1 + 52055 0.7 0.622046
Target:  5'- gCACGGCGgaggCgGGC-CG-CGUGCUGUa -3'
miRNA:   3'- -GUGCUGCa---GgCCGuGCaGCACGACAa -5'
25530 5' -57 NC_005337.1 + 53900 0.7 0.6323
Target:  5'- aCACGaccggguccGCGaCCGGCGCGaacgCGUGCUGg- -3'
miRNA:   3'- -GUGC---------UGCaGGCCGUGCa---GCACGACaa -5'
25530 5' -57 NC_005337.1 + 41407 0.7 0.6323
Target:  5'- gAUGACGUCCGGCguccGCGggagCGUGCcGa- -3'
miRNA:   3'- gUGCUGCAGGCCG----UGCa---GCACGaCaa -5'
25530 5' -57 NC_005337.1 + 82868 0.7 0.642554
Target:  5'- gGCGGCGggaaCgGGCACGUUGgucaGCUGUa -3'
miRNA:   3'- gUGCUGCa---GgCCGUGCAGCa---CGACAa -5'
25530 5' -57 NC_005337.1 + 60878 0.7 0.642554
Target:  5'- aCGCG-CGUCCGGCGuuuCGUCGgGCgUGUg -3'
miRNA:   3'- -GUGCuGCAGGCCGU---GCAGCaCG-ACAa -5'
25530 5' -57 NC_005337.1 + 86236 0.7 0.642554
Target:  5'- uCACGGCGUUgGGCAcCGUCGcGUUGc- -3'
miRNA:   3'- -GUGCUGCAGgCCGU-GCAGCaCGACaa -5'
25530 5' -57 NC_005337.1 + 92851 0.69 0.673234
Target:  5'- aCGCGACGUUCGGCACGcUCccGCg--- -3'
miRNA:   3'- -GUGCUGCAGGCCGUGC-AGcaCGacaa -5'
25530 5' -57 NC_005337.1 + 127299 0.68 0.713625
Target:  5'- gCACGGCGUCaccccGCugGcCGUGCUGc- -3'
miRNA:   3'- -GUGCUGCAGgc---CGugCaGCACGACaa -5'
25530 5' -57 NC_005337.1 + 25346 0.68 0.713625
Target:  5'- gGCGccACGUCgCGGCGCGUCucGCUGg- -3'
miRNA:   3'- gUGC--UGCAG-GCCGUGCAGcaCGACaa -5'
25530 5' -57 NC_005337.1 + 61055 0.68 0.743218
Target:  5'- cCugGugGUCCGGC-CGaUgGUGUUGa- -3'
miRNA:   3'- -GugCugCAGGCCGuGC-AgCACGACaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.