miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25530 5' -57 NC_005337.1 + 75969 0.67 0.81717
Target:  5'- gCACGGacuUGUCCGGCACGUCcucgaagGCgaagGUg -3'
miRNA:   3'- -GUGCU---GCAGGCCGUGCAGca-----CGa---CAa -5'
25530 5' -57 NC_005337.1 + 100214 0.68 0.762475
Target:  5'- cUACGACGgCCGGCGCcG-CGUGCg--- -3'
miRNA:   3'- -GUGCUGCaGGCCGUG-CaGCACGacaa -5'
25530 5' -57 NC_005337.1 + 86408 0.67 0.771934
Target:  5'- gCGCG-CGUCCGGCGCGaUGUGgaUGg- -3'
miRNA:   3'- -GUGCuGCAGGCCGUGCaGCACg-ACaa -5'
25530 5' -57 NC_005337.1 + 7268 0.67 0.771934
Target:  5'- cCACGACGcgcagCUGGacguaGUCGUGCUGg- -3'
miRNA:   3'- -GUGCUGCa----GGCCgug--CAGCACGACaa -5'
25530 5' -57 NC_005337.1 + 48924 0.67 0.784042
Target:  5'- gCACcGCGUCCGGCaacugcgGCGUgaaggcggugauggaCGUGCUGg- -3'
miRNA:   3'- -GUGcUGCAGGCCG-------UGCA---------------GCACGACaa -5'
25530 5' -57 NC_005337.1 + 39670 0.67 0.790467
Target:  5'- gCGCGugGcCCcgGGCACGUaCGUGCg--- -3'
miRNA:   3'- -GUGCugCaGG--CCGUGCA-GCACGacaa -5'
25530 5' -57 NC_005337.1 + 95235 0.67 0.790467
Target:  5'- gCGCGACugGUCCGuGCAC-UCGUGCg--- -3'
miRNA:   3'- -GUGCUG--CAGGC-CGUGcAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 10441 0.67 0.790467
Target:  5'- gCGCGGCGg-UGcGCGCGUCGUGCg--- -3'
miRNA:   3'- -GUGCUGCagGC-CGUGCAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 101234 0.67 0.799522
Target:  5'- --aGGCGUCCGcGCGCGugcUCGcGCUGg- -3'
miRNA:   3'- gugCUGCAGGC-CGUGC---AGCaCGACaa -5'
25530 5' -57 NC_005337.1 + 115265 0.68 0.743218
Target:  5'- gCGCGACGcgcgcUCUGGCgaacGCGUCGUcgagcaGCUGUUc -3'
miRNA:   3'- -GUGCUGC-----AGGCCG----UGCAGCA------CGACAA- -5'
25530 5' -57 NC_005337.1 + 61055 0.68 0.743218
Target:  5'- cCugGugGUCCGGC-CGaUgGUGUUGa- -3'
miRNA:   3'- -GugCugCAGGCCGuGC-AgCACGACaa -5'
25530 5' -57 NC_005337.1 + 25346 0.68 0.713625
Target:  5'- gGCGccACGUCgCGGCGCGUCucGCUGg- -3'
miRNA:   3'- gUGC--UGCAG-GCCGUGCAGcaCGACaa -5'
25530 5' -57 NC_005337.1 + 68390 0.73 0.445167
Target:  5'- uGCGACGUCCGcccuGCGCG-CGUGCgugGUa -3'
miRNA:   3'- gUGCUGCAGGC----CGUGCaGCACGa--CAa -5'
25530 5' -57 NC_005337.1 + 16758 0.72 0.482414
Target:  5'- uCACGGCGcgCCGGCugAUGUCGUGCa--- -3'
miRNA:   3'- -GUGCUGCa-GGCCG--UGCAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 66106 0.72 0.482414
Target:  5'- uGCGGCGUCUGcGCGCG-CGUGgaGUUc -3'
miRNA:   3'- gUGCUGCAGGC-CGUGCaGCACgaCAA- -5'
25530 5' -57 NC_005337.1 + 88028 0.72 0.511309
Target:  5'- gCAgGAUGUgCCGGCGCacgugcacgggGUCGUGCUGg- -3'
miRNA:   3'- -GUgCUGCA-GGCCGUG-----------CAGCACGACaa -5'
25530 5' -57 NC_005337.1 + 53900 0.7 0.6323
Target:  5'- aCACGaccggguccGCGaCCGGCGCGaacgCGUGCUGg- -3'
miRNA:   3'- -GUGC---------UGCaGGCCGUGCa---GCACGACaa -5'
25530 5' -57 NC_005337.1 + 41407 0.7 0.6323
Target:  5'- gAUGACGUCCGGCguccGCGggagCGUGCcGa- -3'
miRNA:   3'- gUGCUGCAGGCCG----UGCa---GCACGaCaa -5'
25530 5' -57 NC_005337.1 + 86236 0.7 0.642554
Target:  5'- uCACGGCGUUgGGCAcCGUCGcGUUGc- -3'
miRNA:   3'- -GUGCUGCAGgCCGU-GCAGCaCGACaa -5'
25530 5' -57 NC_005337.1 + 60878 0.7 0.642554
Target:  5'- aCGCG-CGUCCGGCGuuuCGUCGgGCgUGUg -3'
miRNA:   3'- -GUGCuGCAGGCCGU---GCAGCaCG-ACAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.