Results 41 - 60 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25531 | 5' | -54.2 | NC_005337.1 | + | 112679 | 0.66 | 0.926082 |
Target: 5'- -gACGGCguuaaGGCGgccUACCGCacaGGCACCGg -3' miRNA: 3'- cgUGUCGaa---CUGC---AUGGCG---UCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 77159 | 0.66 | 0.926082 |
Target: 5'- -gGCGGCgaccacGGgGUACUGcCGGCGCCAc -3' miRNA: 3'- cgUGUCGaa----CUgCAUGGC-GUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 127944 | 0.66 | 0.926082 |
Target: 5'- uGUACGGgaUGACGUcgcugGCCGCGcucauGCGCUc -3' miRNA: 3'- -CGUGUCgaACUGCA-----UGGCGU-----CGUGGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 2086 | 0.66 | 0.926082 |
Target: 5'- cGCACGGUgucGGCGcgcGCCGCgAGC-CCGg -3' miRNA: 3'- -CGUGUCGaa-CUGCa--UGGCG-UCGuGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 119334 | 0.66 | 0.926082 |
Target: 5'- uGCGCGGCgacgGugG-ACacaGCGGcCACCAc -3' miRNA: 3'- -CGUGUCGaa--CugCaUGg--CGUC-GUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 92898 | 0.66 | 0.926082 |
Target: 5'- cGCGCGGUUgccGGCGU-CgGCGGCaagGCCGu -3' miRNA: 3'- -CGUGUCGAa--CUGCAuGgCGUCG---UGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 78618 | 0.66 | 0.926082 |
Target: 5'- uCACGGaCUUGGgGUuCUGCuccAGCACCAu -3' miRNA: 3'- cGUGUC-GAACUgCAuGGCG---UCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 48952 | 0.66 | 0.925531 |
Target: 5'- -gGCGGUgaugGACGUGCUggccaagGCgAGCACCAc -3' miRNA: 3'- cgUGUCGaa--CUGCAUGG-------CG-UCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 93809 | 0.66 | 0.920453 |
Target: 5'- -aGCAGCU--GCGcaGCUGCGGCGCUAu -3' miRNA: 3'- cgUGUCGAacUGCa-UGGCGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 88744 | 0.66 | 0.920453 |
Target: 5'- uCAUGGCgcu-CGUcauCCGCGGCGCCGa -3' miRNA: 3'- cGUGUCGaacuGCAu--GGCGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 88779 | 0.66 | 0.920453 |
Target: 5'- gGCGCAGgUccgcGCGUACCagaaGCGGCugCAg -3' miRNA: 3'- -CGUGUCgAac--UGCAUGG----CGUCGugGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 130805 | 0.66 | 0.920453 |
Target: 5'- cGCGCAGUcgcGACG-ACC-CAGUGCCGc -3' miRNA: 3'- -CGUGUCGaa-CUGCaUGGcGUCGUGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 26704 | 0.66 | 0.920453 |
Target: 5'- -gACAGCacgcgGGCGaagACCGCGGCguuGCCGu -3' miRNA: 3'- cgUGUCGaa---CUGCa--UGGCGUCG---UGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 34176 | 0.66 | 0.920453 |
Target: 5'- uGCGCAGCUccacgcGGCGcGCCGCGG-ACUu -3' miRNA: 3'- -CGUGUCGAa-----CUGCaUGGCGUCgUGGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 7274 | 0.66 | 0.920453 |
Target: 5'- cGCGCAGCUgGACGUAgucgugcuggaCGUAGCAgUg -3' miRNA: 3'- -CGUGUCGAaCUGCAUg----------GCGUCGUgGu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 47594 | 0.66 | 0.920453 |
Target: 5'- cGCugGGCgugGGCGacGCCGCGcGCGCg- -3' miRNA: 3'- -CGugUCGaa-CUGCa-UGGCGU-CGUGgu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 70261 | 0.66 | 0.920453 |
Target: 5'- cGCGCuGCgcgcugUGcCGgaaGCCGCGGCACa- -3' miRNA: 3'- -CGUGuCGa-----ACuGCa--UGGCGUCGUGgu -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 82679 | 0.66 | 0.920453 |
Target: 5'- cGCGguGgUUGugGUggagcuGCUGCAGCAgCGa -3' miRNA: 3'- -CGUguCgAACugCA------UGGCGUCGUgGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 122538 | 0.66 | 0.919876 |
Target: 5'- gGCGCGGCgacGCGcGCUGCAGCcggugcugcuccaGCCGa -3' miRNA: 3'- -CGUGUCGaacUGCaUGGCGUCG-------------UGGU- -5' |
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25531 | 5' | -54.2 | NC_005337.1 | + | 46117 | 0.66 | 0.919876 |
Target: 5'- cCGCAGCUgGuCGU-CCuggucggGCGGCACCAg -3' miRNA: 3'- cGUGUCGAaCuGCAuGG-------CGUCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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