miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 8372 0.67 0.90844
Target:  5'- gGCACgAGCUcccaaUGGCcagGCUguGCAGCACCGu -3'
miRNA:   3'- -CGUG-UCGA-----ACUGca-UGG--CGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 9931 0.67 0.887863
Target:  5'- aGCGCGGCcUGAUGcgaucgcGCCGCguccaugAGCGCCu -3'
miRNA:   3'- -CGUGUCGaACUGCa------UGGCG-------UCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 10389 0.66 0.937083
Target:  5'- aCGCAGCUggugcucgggcugugGAgGUGCgGCuGCGCCc -3'
miRNA:   3'- cGUGUCGAa--------------CUgCAUGgCGuCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 10617 0.68 0.858752
Target:  5'- aGCgGCGGCgccagGACG-ACCGUcGCGCCGc -3'
miRNA:   3'- -CG-UGUCGaa---CUGCaUGGCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 10678 0.66 0.931459
Target:  5'- aGCGCGGC---ACGUgcgGCCGCAGCuCgCAg -3'
miRNA:   3'- -CGUGUCGaacUGCA---UGGCGUCGuG-GU- -5'
25531 5' -54.2 NC_005337.1 + 11088 0.71 0.730659
Target:  5'- -gGCAGCUcucGGCGUACaCGC-GCACCu -3'
miRNA:   3'- cgUGUCGAa--CUGCAUG-GCGuCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 11157 0.69 0.825492
Target:  5'- gGCGCcGCacGACGUGCuCGCcGUGCCAg -3'
miRNA:   3'- -CGUGuCGaaCUGCAUG-GCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 11213 0.76 0.435963
Target:  5'- aCGCGGCUcaUGcCGUACCGCAgguGCACCu -3'
miRNA:   3'- cGUGUCGA--ACuGCAUGGCGU---CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 11529 0.67 0.888564
Target:  5'- aCGCGGUc-GGCGUGCCGgaucacgGGCACCAg -3'
miRNA:   3'- cGUGUCGaaCUGCAUGGCg------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 11910 0.72 0.668804
Target:  5'- cGCACAuGCgcgUGGCGU-CCgauGCGGCACCc -3'
miRNA:   3'- -CGUGU-CGa--ACUGCAuGG---CGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 14420 0.71 0.710295
Target:  5'- -uGCcGCgcGACGUGCCGCcgcuGGCGCCGg -3'
miRNA:   3'- cgUGuCGaaCUGCAUGGCG----UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 14505 0.7 0.74071
Target:  5'- cGCGCGGCcacaugcguaucUUGcucGCGUGCUGCuggcGCACCAu -3'
miRNA:   3'- -CGUGUCG------------AAC---UGCAUGGCGu---CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 14669 0.66 0.914572
Target:  5'- aGCGCGGCgaGACaggaGuuGCAGCGCUc -3'
miRNA:   3'- -CGUGUCGaaCUGca--UggCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 14949 0.66 0.931459
Target:  5'- uGCGCAGgaUGGCcu-CgCGCAGCACa- -3'
miRNA:   3'- -CGUGUCgaACUGcauG-GCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 14996 0.7 0.74071
Target:  5'- uGCGCAGCUUGGUGaGCCG--GCGCCGc -3'
miRNA:   3'- -CGUGUCGAACUGCaUGGCguCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 15245 0.67 0.895433
Target:  5'- uUACAGCaggGACaGUACaCaCAGCACCAg -3'
miRNA:   3'- cGUGUCGaa-CUG-CAUG-GcGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 15485 0.67 0.895433
Target:  5'- cGCGCGGCacGACGgcgccGCCGcCGGCGUCAu -3'
miRNA:   3'- -CGUGUCGaaCUGCa----UGGC-GUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 15527 0.68 0.874115
Target:  5'- cGCGCAGC---ACGcAgCGCAGCAUCGu -3'
miRNA:   3'- -CGUGUCGaacUGCaUgGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 15854 0.66 0.936584
Target:  5'- aGCGCgGGCUUGGCGgcUCGcCGGCcucgcucaugACCGg -3'
miRNA:   3'- -CGUG-UCGAACUGCauGGC-GUCG----------UGGU- -5'
25531 5' -54.2 NC_005337.1 + 16018 0.69 0.833253
Target:  5'- cGCGCGGCcgGcagguacACGcGCUGCGGCGCCu -3'
miRNA:   3'- -CGUGUCGaaC-------UGCaUGGCGUCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.