miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 652 0.7 0.770226
Target:  5'- uGCACGGCgacggUGACcucCUGCAGCAgCAg -3'
miRNA:   3'- -CGUGUCGa----ACUGcauGGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 652 0.7 0.770226
Target:  5'- uGCACGGCgacggUGACcucCUGCAGCAgCAg -3'
miRNA:   3'- -CGUGUCGa----ACUGcauGGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 1104 0.67 0.881456
Target:  5'- gGCGCAGCgccgccGcCGggagcaGCCGCAGCACg- -3'
miRNA:   3'- -CGUGUCGaa----CuGCa-----UGGCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 1104 0.67 0.881456
Target:  5'- gGCGCAGCgccgccGcCGggagcaGCCGCAGCACg- -3'
miRNA:   3'- -CGUGUCGaa----CuGCa-----UGGCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 1988 0.71 0.730659
Target:  5'- aGCucCAGCUcgcgucgGACG-ACCGCAGCAgCAc -3'
miRNA:   3'- -CGu-GUCGAa------CUGCaUGGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 2059 0.69 0.807717
Target:  5'- aGguCGGCcc--CGUGCCGCAGCAgCAg -3'
miRNA:   3'- -CguGUCGaacuGCAUGGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 2086 0.66 0.926082
Target:  5'- cGCACGGUgucGGCGcgcGCCGCgAGC-CCGg -3'
miRNA:   3'- -CGUGUCGaa-CUGCa--UGGCG-UCGuGGU- -5'
25531 5' -54.2 NC_005337.1 + 2188 0.66 0.914572
Target:  5'- cGCACGGCgcaggcggcgGACGcgGgCGCGGC-CCGg -3'
miRNA:   3'- -CGUGUCGaa--------CUGCa-UgGCGUCGuGGU- -5'
25531 5' -54.2 NC_005337.1 + 2342 0.78 0.357733
Target:  5'- gGUACAGCUccgGggccaGCGcGCCGCAGCACCGg -3'
miRNA:   3'- -CGUGUCGAa--C-----UGCaUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 2782 0.66 0.931459
Target:  5'- cCACgAGCgcgGACcgGUGCCGCAuguGCACUAg -3'
miRNA:   3'- cGUG-UCGaa-CUG--CAUGGCGU---CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 2900 0.71 0.730659
Target:  5'- cCGCGGUcgaaGACGUACCGCGcGCGCUu -3'
miRNA:   3'- cGUGUCGaa--CUGCAUGGCGU-CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 3252 0.68 0.842525
Target:  5'- cGCACGcCUUGuCGUugCGguGCGCg- -3'
miRNA:   3'- -CGUGUcGAACuGCAugGCguCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 3380 0.66 0.931459
Target:  5'- uGCGCGGCcaUGAgGUGCaGCGGCguguuGCCGc -3'
miRNA:   3'- -CGUGUCGa-ACUgCAUGgCGUCG-----UGGU- -5'
25531 5' -54.2 NC_005337.1 + 3485 0.67 0.902059
Target:  5'- aGCGCAGCa-GcCGcACCgGCGGCGCCc -3'
miRNA:   3'- -CGUGUCGaaCuGCaUGG-CGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 4586 0.67 0.881456
Target:  5'- gGCGCGGCgacUGcGCGUGCUGguGCAg-- -3'
miRNA:   3'- -CGUGUCGa--AC-UGCAUGGCguCGUggu -5'
25531 5' -54.2 NC_005337.1 + 5447 0.73 0.6058
Target:  5'- uCGgGGCUaguUGACGUACCacacggugguGCGGCACCGc -3'
miRNA:   3'- cGUgUCGA---ACUGCAUGG----------CGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 5755 0.71 0.710295
Target:  5'- gGCACGGCggcgGGCGgcaGCCGC-GCgACCAc -3'
miRNA:   3'- -CGUGUCGaa--CUGCa--UGGCGuCG-UGGU- -5'
25531 5' -54.2 NC_005337.1 + 6205 0.71 0.720517
Target:  5'- gGCGCGGCgacugcaUGugGUGgUGCAGCAgCGu -3'
miRNA:   3'- -CGUGUCGa------ACugCAUgGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 7274 0.66 0.920453
Target:  5'- cGCGCAGCUgGACGUAgucgugcuggaCGUAGCAgUg -3'
miRNA:   3'- -CGUGUCGAaCUGCAUg----------GCGUCGUgGu -5'
25531 5' -54.2 NC_005337.1 + 7829 0.67 0.881456
Target:  5'- cGCgACAGCgcgcgGugGUACaCGCGcacgcGCGCCGu -3'
miRNA:   3'- -CG-UGUCGaa---CugCAUG-GCGU-----CGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.