miRNA display CGI


Results 1 - 20 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 131729 0.71 0.689651
Target:  5'- cGgGCAGCUccGCGUGCCGCAGaACUg -3'
miRNA:   3'- -CgUGUCGAacUGCAUGGCGUCgUGGu -5'
25531 5' -54.2 NC_005337.1 + 68525 0.73 0.6058
Target:  5'- cGCGCucGGCUcUGAgCGUGCCGCgcuagugacGGCGCCGg -3'
miRNA:   3'- -CGUG--UCGA-ACU-GCAUGGCG---------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 95938 0.73 0.6058
Target:  5'- uGCGCAGC---GCGUACuCGCccGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaacUGCAUG-GCG--UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 17281 0.72 0.631014
Target:  5'- cGCACguugaAGCUgucgagGAUGUGCCcgcccuccucguccuGCAGCACCAc -3'
miRNA:   3'- -CGUG-----UCGAa-----CUGCAUGG---------------CGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 133709 0.72 0.634168
Target:  5'- cGCGCGGCcgcGGCGUACgCGCggcgguggcggaguGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaa-CUGCAUG-GCG--------------UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 74554 0.72 0.637322
Target:  5'- cGCGCGGCgcgUGAUGcugGCCGCgcGGCACgCGg -3'
miRNA:   3'- -CGUGUCGa--ACUGCa--UGGCG--UCGUG-GU- -5'
25531 5' -54.2 NC_005337.1 + 27199 0.72 0.647833
Target:  5'- cGCACAGCggcacccccUGGCGcGCCGCcGcCGCCAg -3'
miRNA:   3'- -CGUGUCGa--------ACUGCaUGGCGuC-GUGGU- -5'
25531 5' -54.2 NC_005337.1 + 17592 0.72 0.65833
Target:  5'- gGC-CGGCUcgcccgcgGGCG-GCUGCAGCACCAu -3'
miRNA:   3'- -CGuGUCGAa-------CUGCaUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 38605 0.72 0.668804
Target:  5'- aGCGCAGCgugGGCGUGCUGgGGaACCc -3'
miRNA:   3'- -CGUGUCGaa-CUGCAUGGCgUCgUGGu -5'
25531 5' -54.2 NC_005337.1 + 5447 0.73 0.6058
Target:  5'- uCGgGGCUaguUGACGUACCacacggugguGCGGCACCGc -3'
miRNA:   3'- cGUgUCGA---ACUGCAUGG----------CGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 48653 0.73 0.574462
Target:  5'- cGCGCAGCUggacgccgUGAUGaagGCCgugaGCAGCACCu -3'
miRNA:   3'- -CGUGUCGA--------ACUGCa--UGG----CGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 100693 0.73 0.564093
Target:  5'- cGCGCGGCc-GACGcgaCGCGGCGCCGc -3'
miRNA:   3'- -CGUGUCGaaCUGCaugGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 109206 0.79 0.283001
Target:  5'- cGCGCAGCUUGACGaacGCCGCccgcacGGCGCgCAg -3'
miRNA:   3'- -CGUGUCGAACUGCa--UGGCG------UCGUG-GU- -5'
25531 5' -54.2 NC_005337.1 + 36485 0.78 0.318726
Target:  5'- cGCACGGcCUUGGCcgcgGCCGCGGCGCUc -3'
miRNA:   3'- -CGUGUC-GAACUGca--UGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 2342 0.78 0.357733
Target:  5'- gGUACAGCUccgGggccaGCGcGCCGCAGCACCGg -3'
miRNA:   3'- -CGUGUCGAa--C-----UGCaUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 55202 0.76 0.435963
Target:  5'- uGCGCAGCUucguggUGGCGcGCCGCaAGgACCAg -3'
miRNA:   3'- -CGUGUCGA------ACUGCaUGGCG-UCgUGGU- -5'
25531 5' -54.2 NC_005337.1 + 109817 0.74 0.523183
Target:  5'- cGUGCAGCgUGACGUACUGCccGGCGgCGg -3'
miRNA:   3'- -CGUGUCGaACUGCAUGGCG--UCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 130628 0.74 0.533313
Target:  5'- uGCGCGGac-GACGagGCCGCGGCGCUg -3'
miRNA:   3'- -CGUGUCgaaCUGCa-UGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 69928 0.74 0.543512
Target:  5'- aCACGGCUg--UGUaccGCCGCGGCGCCAc -3'
miRNA:   3'- cGUGUCGAacuGCA---UGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 21139 0.74 0.553774
Target:  5'- -aACAGC---ACGUACCGCAGCGCg- -3'
miRNA:   3'- cgUGUCGaacUGCAUGGCGUCGUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.