miRNA display CGI


Results 1 - 20 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 77159 0.66 0.926082
Target:  5'- -gGCGGCgaccacGGgGUACUGcCGGCGCCAc -3'
miRNA:   3'- cgUGUCGaa----CUgCAUGGC-GUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 3380 0.66 0.931459
Target:  5'- uGCGCGGCcaUGAgGUGCaGCGGCguguuGCCGc -3'
miRNA:   3'- -CGUGUCGa-ACUgCAUGgCGUCG-----UGGU- -5'
25531 5' -54.2 NC_005337.1 + 93809 0.66 0.920453
Target:  5'- -aGCAGCU--GCGcaGCUGCGGCGCUAu -3'
miRNA:   3'- cgUGUCGAacUGCa-UGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 48952 0.66 0.925531
Target:  5'- -gGCGGUgaugGACGUGCUggccaagGCgAGCACCAc -3'
miRNA:   3'- cgUGUCGaa--CUGCAUGG-------CG-UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 24521 0.66 0.914572
Target:  5'- cCGCGGaCgaccucgcgGACGUGCUGC-GCACCGc -3'
miRNA:   3'- cGUGUC-Gaa-------CUGCAUGGCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 122538 0.66 0.919876
Target:  5'- gGCGCGGCgacGCGcGCUGCAGCcggugcugcuccaGCCGa -3'
miRNA:   3'- -CGUGUCGaacUGCaUGGCGUCG-------------UGGU- -5'
25531 5' -54.2 NC_005337.1 + 109083 0.66 0.941458
Target:  5'- cGCGCGaugccGCUggaGugGUucacgcucaGCCGCGuGCACCAc -3'
miRNA:   3'- -CGUGU-----CGAa--CugCA---------UGGCGU-CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 47594 0.66 0.920453
Target:  5'- cGCugGGCgugGGCGacGCCGCGcGCGCg- -3'
miRNA:   3'- -CGugUCGaa-CUGCa-UGGCGU-CGUGgu -5'
25531 5' -54.2 NC_005337.1 + 127944 0.66 0.926082
Target:  5'- uGUACGGgaUGACGUcgcugGCCGCGcucauGCGCUc -3'
miRNA:   3'- -CGUGUCgaACUGCA-----UGGCGU-----CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 69973 0.66 0.914572
Target:  5'- cGCGCAagacGCcgGACGcgACCGCcguGCACCu -3'
miRNA:   3'- -CGUGU----CGaaCUGCa-UGGCGu--CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 14669 0.66 0.914572
Target:  5'- aGCGCGGCgaGACaggaGuuGCAGCGCUc -3'
miRNA:   3'- -CGUGUCGaaCUGca--UggCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 34176 0.66 0.920453
Target:  5'- uGCGCAGCUccacgcGGCGcGCCGCGG-ACUu -3'
miRNA:   3'- -CGUGUCGAa-----CUGCaUGGCGUCgUGGu -5'
25531 5' -54.2 NC_005337.1 + 28496 0.66 0.914572
Target:  5'- cGCGCGGCgc-GCGgucgCGCGGCACUg -3'
miRNA:   3'- -CGUGUCGaacUGCaug-GCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 112679 0.66 0.926082
Target:  5'- -gACGGCguuaaGGCGgccUACCGCacaGGCACCGg -3'
miRNA:   3'- cgUGUCGaa---CUGC---AUGGCG---UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 26704 0.66 0.920453
Target:  5'- -gACAGCacgcgGGCGaagACCGCGGCguuGCCGu -3'
miRNA:   3'- cgUGUCGaa---CUGCa--UGGCGUCG---UGGU- -5'
25531 5' -54.2 NC_005337.1 + 70261 0.66 0.920453
Target:  5'- cGCGCuGCgcgcugUGcCGgaaGCCGCGGCACa- -3'
miRNA:   3'- -CGUGuCGa-----ACuGCa--UGGCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 2086 0.66 0.926082
Target:  5'- cGCACGGUgucGGCGcgcGCCGCgAGC-CCGg -3'
miRNA:   3'- -CGUGUCGaa-CUGCa--UGGCG-UCGuGGU- -5'
25531 5' -54.2 NC_005337.1 + 88744 0.66 0.920453
Target:  5'- uCAUGGCgcu-CGUcauCCGCGGCGCCGa -3'
miRNA:   3'- cGUGUCGaacuGCAu--GGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 119334 0.66 0.926082
Target:  5'- uGCGCGGCgacgGugG-ACacaGCGGcCACCAc -3'
miRNA:   3'- -CGUGUCGaa--CugCaUGg--CGUC-GUGGU- -5'
25531 5' -54.2 NC_005337.1 + 82679 0.66 0.920453
Target:  5'- cGCGguGgUUGugGUggagcuGCUGCAGCAgCGa -3'
miRNA:   3'- -CGUguCgAACugCA------UGGCGUCGUgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.