miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 117965 1.11 0.002366
Target:  5'- cGCACAGCUUGACGUACCGCAGCACCAg -3'
miRNA:   3'- -CGUGUCGAACUGCAUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 99296 0.86 0.106212
Target:  5'- gGCGCGGCgcGGCGUuCCGCAGCGCCGg -3'
miRNA:   3'- -CGUGUCGaaCUGCAuGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 91874 0.8 0.26313
Target:  5'- cGCACAGCgagGccGCGcGCCGCGGCGCCu -3'
miRNA:   3'- -CGUGUCGaa-C--UGCaUGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 109206 0.79 0.283001
Target:  5'- cGCGCAGCUUGACGaacGCCGCccgcacGGCGCgCAg -3'
miRNA:   3'- -CGUGUCGAACUGCa--UGGCG------UCGUG-GU- -5'
25531 5' -54.2 NC_005337.1 + 36485 0.78 0.318726
Target:  5'- cGCACGGcCUUGGCcgcgGCCGCGGCGCUc -3'
miRNA:   3'- -CGUGUC-GAACUGca--UGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 2342 0.78 0.357733
Target:  5'- gGUACAGCUccgGggccaGCGcGCCGCAGCACCGg -3'
miRNA:   3'- -CGUGUCGAa--C-----UGCaUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 46495 0.76 0.417729
Target:  5'- cGCGCGGCc-GAC--ACCGCGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaaCUGcaUGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 55202 0.76 0.435963
Target:  5'- uGCGCAGCUucguggUGGCGcGCCGCaAGgACCAg -3'
miRNA:   3'- -CGUGUCGA------ACUGCaUGGCG-UCgUGGU- -5'
25531 5' -54.2 NC_005337.1 + 11213 0.76 0.435963
Target:  5'- aCGCGGCUcaUGcCGUACCGCAgguGCACCu -3'
miRNA:   3'- cGUGUCGA--ACuGCAUGGCGU---CGUGGu -5'
25531 5' -54.2 NC_005337.1 + 109817 0.74 0.523183
Target:  5'- cGUGCAGCgUGACGUACUGCccGGCGgCGg -3'
miRNA:   3'- -CGUGUCGaACUGCAUGGCG--UCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 130628 0.74 0.533313
Target:  5'- uGCGCGGac-GACGagGCCGCGGCGCUg -3'
miRNA:   3'- -CGUGUCgaaCUGCa-UGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 69928 0.74 0.543512
Target:  5'- aCACGGCUg--UGUaccGCCGCGGCGCCAc -3'
miRNA:   3'- cGUGUCGAacuGCA---UGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 16095 0.74 0.553774
Target:  5'- gGCGCgAGCUcGaACGgguccGCCGCGGCGCCGu -3'
miRNA:   3'- -CGUG-UCGAaC-UGCa----UGGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 21139 0.74 0.553774
Target:  5'- -aACAGC---ACGUACCGCAGCGCg- -3'
miRNA:   3'- cgUGUCGaacUGCAUGGCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 85903 0.73 0.563059
Target:  5'- gGCGCGGC-UGACGUucucguccaccACCGCGGCcugguucACCGg -3'
miRNA:   3'- -CGUGUCGaACUGCA-----------UGGCGUCG-------UGGU- -5'
25531 5' -54.2 NC_005337.1 + 65096 0.73 0.563059
Target:  5'- aGCACGcucacguGCUUGGCGaugUGCUGCAGCAgCAc -3'
miRNA:   3'- -CGUGU-------CGAACUGC---AUGGCGUCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 100693 0.73 0.564093
Target:  5'- cGCGCGGCc-GACGcgaCGCGGCGCCGc -3'
miRNA:   3'- -CGUGUCGaaCUGCaugGCGUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 48653 0.73 0.574462
Target:  5'- cGCGCAGCUggacgccgUGAUGaagGCCgugaGCAGCACCu -3'
miRNA:   3'- -CGUGUCGA--------ACUGCa--UGG----CGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 95938 0.73 0.6058
Target:  5'- uGCGCAGC---GCGUACuCGCccGGCGCCGg -3'
miRNA:   3'- -CGUGUCGaacUGCAUG-GCG--UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 68525 0.73 0.6058
Target:  5'- cGCGCucGGCUcUGAgCGUGCCGCgcuagugacGGCGCCGg -3'
miRNA:   3'- -CGUG--UCGA-ACU-GCAUGGCG---------UCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.