miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 3' -51.5 NC_005337.1 + 117479 1.11 0.005483
Target:  5'- aCUUCUCGAACACGGUGCUGAUGGACGg -3'
miRNA:   3'- -GAAGAGCUUGUGCCACGACUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 97820 0.84 0.271443
Target:  5'- uCUUCUCGGGCACGGgGCUGGaccuccccaaccUGGACGc -3'
miRNA:   3'- -GAAGAGCUUGUGCCaCGACU------------ACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 127775 0.76 0.600471
Target:  5'- -gUCUUGAcggaGCGCguggugcgGGUGCUGGUGGACGc -3'
miRNA:   3'- gaAGAGCU----UGUG--------CCACGACUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 24611 0.76 0.606798
Target:  5'- cCUUCggcgCGGGCACGGaggugacggaaaaGCUGGUGGACGc -3'
miRNA:   3'- -GAAGa---GCUUGUGCCa------------CGACUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 126396 0.75 0.657522
Target:  5'- -cUCUgGGAUACGGUGCUGGaaaaggcggccgaccUGGACu -3'
miRNA:   3'- gaAGAgCUUGUGCCACGACU---------------ACCUGc -5'
25532 3' -51.5 NC_005337.1 + 117722 0.74 0.715983
Target:  5'- ----gUGAAgACGGUGCUGcgGGACGc -3'
miRNA:   3'- gaagaGCUUgUGCCACGACuaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 65416 0.74 0.726221
Target:  5'- gUUCUCcGGCGCGGgGCUGGUGG-CGu -3'
miRNA:   3'- gAAGAGcUUGUGCCaCGACUACCuGC- -5'
25532 3' -51.5 NC_005337.1 + 86983 0.73 0.804151
Target:  5'- gCUUCUUGAAgcCGCGGagcuUGUUGAUGGAgGa -3'
miRNA:   3'- -GAAGAGCUU--GUGCC----ACGACUACCUgC- -5'
25532 3' -51.5 NC_005337.1 + 6199 0.71 0.863831
Target:  5'- -gUCUCGGGCGCGGcGaCUGcauGUGGugGu -3'
miRNA:   3'- gaAGAGCUUGUGCCaC-GAC---UACCugC- -5'
25532 3' -51.5 NC_005337.1 + 93235 0.71 0.878987
Target:  5'- aCUUCcgCGAcaACGCGGagcgGCUGGUGG-CGg -3'
miRNA:   3'- -GAAGa-GCU--UGUGCCa---CGACUACCuGC- -5'
25532 3' -51.5 NC_005337.1 + 75397 0.7 0.912693
Target:  5'- -gUCUUGGccGCGCGGaUGCUGc-GGACGg -3'
miRNA:   3'- gaAGAGCU--UGUGCC-ACGACuaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 101123 0.7 0.918099
Target:  5'- --aCUCaGAGCGCGGcUGCgcggaccUGGUGGACa -3'
miRNA:   3'- gaaGAG-CUUGUGCC-ACG-------ACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 35424 0.68 0.953114
Target:  5'- aCUgCUCGAuggacgcGCACGGcGC-GGUGGGCGc -3'
miRNA:   3'- -GAaGAGCU-------UGUGCCaCGaCUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 24840 0.68 0.953525
Target:  5'- --gCUCGAGCgGCGcGUGCUcGA-GGACGu -3'
miRNA:   3'- gaaGAGCUUG-UGC-CACGA-CUaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 96233 0.68 0.953525
Target:  5'- ----aCGAugAUGGUGaUGAUGGACa -3'
miRNA:   3'- gaagaGCUugUGCCACgACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 51929 0.68 0.957504
Target:  5'- cCUUCggcaCGGGCAuCGGcgGCaUGGUGGACa -3'
miRNA:   3'- -GAAGa---GCUUGU-GCCa-CG-ACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 57473 0.68 0.961244
Target:  5'- -aUCaagCGcGCGCaccucacugaGGUGCUGGUGGACa -3'
miRNA:   3'- gaAGa--GCuUGUG----------CCACGACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 121564 0.68 0.964749
Target:  5'- --cCUCGAGCGCGGcGCgcgcgcGGACGc -3'
miRNA:   3'- gaaGAGCUUGUGCCaCGacua--CCUGC- -5'
25532 3' -51.5 NC_005337.1 + 67900 0.67 0.968026
Target:  5'- --gCUCGAA-GCGGUGgaGccGGACGg -3'
miRNA:   3'- gaaGAGCUUgUGCCACgaCuaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 49248 0.67 0.976551
Target:  5'- --aCUCGAcccGCGaGGgcucGCUGGUGGACa -3'
miRNA:   3'- gaaGAGCU---UGUgCCa---CGACUACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.