miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 3' -51.5 NC_005337.1 + 97820 0.84 0.271443
Target:  5'- uCUUCUCGGGCACGGgGCUGGaccuccccaaccUGGACGc -3'
miRNA:   3'- -GAAGAGCUUGUGCCaCGACU------------ACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 104555 0.66 0.989842
Target:  5'- uCUUCUgCGAGCGCG-UGCUcuacgaccccgaGAcGGACGa -3'
miRNA:   3'- -GAAGA-GCUUGUGCcACGA------------CUaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 89937 0.66 0.988432
Target:  5'- -gUCUUcAGCGCGGcGUUGAUGG-CGu -3'
miRNA:   3'- gaAGAGcUUGUGCCaCGACUACCuGC- -5'
25532 3' -51.5 NC_005337.1 + 98627 0.66 0.986873
Target:  5'- gCUUCUCGAAUAUG-UGUg---GGACGa -3'
miRNA:   3'- -GAAGAGCUUGUGCcACGacuaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 74930 0.66 0.985337
Target:  5'- cCUUCgcgcgcgcggccgcgCGGAUGCGGUGCUG--GGGCu -3'
miRNA:   3'- -GAAGa--------------GCUUGUGCCACGACuaCCUGc -5'
25532 3' -51.5 NC_005337.1 + 22650 0.66 0.985158
Target:  5'- cCUUCggcgCGGACGCGcG-GCUGcgGGAgCGc -3'
miRNA:   3'- -GAAGa---GCUUGUGC-CaCGACuaCCU-GC- -5'
25532 3' -51.5 NC_005337.1 + 44899 0.66 0.985158
Target:  5'- ---aUgGAgGCACGGUGCUGcgGGAg- -3'
miRNA:   3'- gaagAgCU-UGUGCCACGACuaCCUgc -5'
25532 3' -51.5 NC_005337.1 + 92003 0.66 0.983277
Target:  5'- gCUUCUCcagcccgucgagGAACAUGGaguccaGCgGGUGGACGu -3'
miRNA:   3'- -GAAGAG------------CUUGUGCCa-----CGaCUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 60221 0.66 0.983277
Target:  5'- --gCUUGGGCGCGGggGCUGGggcugGGGuCGg -3'
miRNA:   3'- gaaGAGCUUGUGCCa-CGACUa----CCU-GC- -5'
25532 3' -51.5 NC_005337.1 + 18443 0.66 0.981222
Target:  5'- --cCUUGAGCACGG-GC-GggGGACu -3'
miRNA:   3'- gaaGAGCUUGUGCCaCGaCuaCCUGc -5'
25532 3' -51.5 NC_005337.1 + 96386 0.67 0.978982
Target:  5'- ----gCGAGCACGGg---GGUGGACGu -3'
miRNA:   3'- gaagaGCUUGUGCCacgaCUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 127775 0.76 0.600471
Target:  5'- -gUCUUGAcggaGCGCguggugcgGGUGCUGGUGGACGc -3'
miRNA:   3'- gaAGAGCU----UGUG--------CCACGACUACCUGC- -5'
25532 3' -51.5 NC_005337.1 + 117722 0.74 0.715983
Target:  5'- ----gUGAAgACGGUGCUGcgGGACGc -3'
miRNA:   3'- gaagaGCUUgUGCCACGACuaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 101123 0.7 0.918099
Target:  5'- --aCUCaGAGCGCGGcUGCgcggaccUGGUGGACa -3'
miRNA:   3'- gaaGAG-CUUGUGCC-ACG-------ACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 96233 0.68 0.953525
Target:  5'- ----aCGAugAUGGUGaUGAUGGACa -3'
miRNA:   3'- gaagaGCUugUGCCACgACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 57473 0.68 0.961244
Target:  5'- -aUCaagCGcGCGCaccucacugaGGUGCUGGUGGACa -3'
miRNA:   3'- gaAGa--GCuUGUG----------CCACGACUACCUGc -5'
25532 3' -51.5 NC_005337.1 + 121564 0.68 0.964749
Target:  5'- --cCUCGAGCGCGGcGCgcgcgcGGACGc -3'
miRNA:   3'- gaaGAGCUUGUGCCaCGacua--CCUGC- -5'
25532 3' -51.5 NC_005337.1 + 67900 0.67 0.968026
Target:  5'- --gCUCGAA-GCGGUGgaGccGGACGg -3'
miRNA:   3'- gaaGAGCUUgUGCCACgaCuaCCUGC- -5'
25532 3' -51.5 NC_005337.1 + 108005 0.66 0.988432
Target:  5'- aCUUCUaCGAGgGCGGgcGCgUGAUGG-CGc -3'
miRNA:   3'- -GAAGA-GCUUgUGCCa-CG-ACUACCuGC- -5'
25532 3' -51.5 NC_005337.1 + 24611 0.76 0.606798
Target:  5'- cCUUCggcgCGGGCACGGaggugacggaaaaGCUGGUGGACGc -3'
miRNA:   3'- -GAAGa---GCUUGUGCCa------------CGACUACCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.